2AVU | pdb_00002avu

Structure of the Escherichia coli FlhDC complex, a prokaryotic heteromeric regulator of transcription

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2avuf_	Multi-domain proteins (alpha and beta)	FlhC-like	FlhC-like	FlhC-like	Flagellar transcriptional activator FlhC	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
E	d2avue1	Multi-domain proteins (alpha and beta)	FlhC-like	FlhC-like	FlhC-like	Flagellar transcriptional activator FlhC	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
D	d2avud_	All alpha proteins	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d2avuc_	All alpha proteins	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d2avub_	All alpha proteins	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d2avua_	All alpha proteins	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	Flagellar transcriptional activator FlhD	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	FlhC-like	8032670	3001562	SCOP2B (2022-06-29)
E	SCOP2 Family	FlhC-like	8020290	4002657	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	FlhC-like	8032670	3001562	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Flagellar transcriptional activator FlhD	8032668	3000232	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Flagellar transcriptional activator FlhD	8032668	3000232	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	HHH_5	e2avuF1	A: alpha bundles	X: EGF-like	H: YozE-like	T: YozE-like	F: HHH_5	ECOD (develop294)
F	C1_1	e2avuF3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: C1_1	ECOD (develop294)
E	FlhC	e2avuE1	A: alpha arrays	X: HTH	H: helical bundles in FlhC-like proteins	T: helical bundles in FlhC-like proteins	F: FlhC	ECOD (develop294)
E	FlhC	e2avuE3	A: few secondary structure elements	X: Rubredoxin-like	H: FlhC-like	T: FlhC-like	F: FlhC	ECOD (develop294)
D	Terminase_2	e2avuD1	A: alpha bundles	X: small terminase oligomerization domain	H: small terminase oligomerization domain	T: small terminase oligomerization domain	F: Terminase_2	ECOD (develop294)
C	HHH_5	e2avuC1	A: alpha bundles	X: EGF-like	H: YozE-like	T: YozE-like	F: HHH_5	ECOD (develop294)
B	Med26	e2avuB1	A: alpha bundles	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Med26	ECOD (develop294)
A	HHH_5	e2avuA1	A: alpha bundles	X: EGF-like	H: YozE-like	T: YozE-like	F: HHH_5	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.4000.10	Mainly Alpha	Orthogonal Bundle	Flagellar transcriptional activator fold	Flagellar transcriptional activator FlhD	CATH (4.3.0)
C	1.10.4000.10	Mainly Alpha	Orthogonal Bundle	Flagellar transcriptional activator fold	Flagellar transcriptional activator FlhD	CATH (4.3.0)
B	1.10.4000.10	Mainly Alpha	Orthogonal Bundle	Flagellar transcriptional activator fold	Flagellar transcriptional activator FlhD	CATH (4.3.0)
A	1.10.4000.10	Mainly Alpha	Orthogonal Bundle	Flagellar transcriptional activator fold	Flagellar transcriptional activator FlhD	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F	Flagellar transcriptional activator flhC	DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding	cellular component organization bacterial-type flagellum organization organelle organization cell projection organization cellular process cellular component organization or biogenesis positive regulation of organelle organization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization bacterial-type flagellum assembly positive regulation of biological process membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cell projection organization cellular process cellular component organization or biogenesis positive regulation of organelle organization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization bacterial-type flagellum assembly positive regulation of biological process membraneless organelle assembly cellular component biogenesis cellular component assembly positive regulation of cell projection organization positive regulation of cellular process regulation of bacterial-type flagellum assembly regulation of biological process organelle assembly positive regulation of cellular component biogenesis regulation of cell projection assembly regulation of cell projection organization positive regulation of bacterial-type flagellum assembly biological regulation regulation of cellular component biogenesis regulation of organelle organization regulation of organelle assembly cell projection assembly positive regulation of organelle assembly RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	protein-containing complex transcription regulator complex cellular anatomical structure intracellular anatomical structure cytoplasm
A, B, C, D	Transcriptional activator flhD	DNA binding binding nucleic acid binding	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly positive regulation of organelle organization regulation of cellular process organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly positive regulation of organelle organization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process positive regulation of cell projection organization positive regulation of cellular process regulation of bacterial-type flagellum assembly regulation of biological process positive regulation of cellular component biogenesis regulation of cell projection assembly regulation of cell projection organization positive regulation of bacterial-type flagellum assembly biological regulation regulation of cellular component biogenesis regulation of organelle organization regulation of organelle assembly positive regulation of organelle assembly RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	protein-containing complex transcription regulator complex cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F	IPR007944	Flagellar transcriptional activator FlhC	Family
A, B, C, D	IPR023559	Flagellar transcriptional activator FlhD	Family
A, B, C, D	IPR036194	Flagellar transcriptional activator FlhD superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.