2AUW

Crystal Structure of Putative DNA Binding Protein NE0471 from Nitrosomonas europaea ATCC 19718

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2auwa1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	NE0471 C-terminal domain-like	Hypothetical protein NE0471 C-terminal domain	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
A	d2auwa2	Alpha and beta proteins (a+b)	NE0471 N-terminal domain-like	NE0471 N-terminal domain-like	NE0471 N-terminal domain-like	Hypothetical protein NE0471 N-terminal domain	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
B	d2auwb1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	NE0471 C-terminal domain-like	Hypothetical protein NE0471 C-terminal domain	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
B	d2auwb2	Alpha and beta proteins (a+b)	NE0471 N-terminal domain-like	NE0471 N-terminal domain-like	NE0471 N-terminal domain-like	Hypothetical protein NE0471 N-terminal domain	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	NE0471 C-terminal domain-like	8024992	4001278	SCOP2 (2022-06-29)
A	SCOP2 Family	NE0471 N-terminal domain-like	8024993	4000410	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	lambda C1 repressor DNA-binding domain-like	8037371	3000119	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NE0471 N-terminal domain-like	8037372	3000231	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037371	3000119	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	NE0471 N-terminal domain-like	8037372	3000231	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF2442	e2auwA2	A: beta barrels	X: XRCC4, N-terminal domain-like	H: NE0471 N-terminal domain-like (From Topology)	T: NE0471 N-terminal domain-like	F: DUF2442	ECOD (1.6)
A	HTH_3_5	e2auwA1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_5	ECOD (1.6)
B	DUF2442	e2auwB2	A: beta barrels	X: XRCC4, N-terminal domain-like	H: NE0471 N-terminal domain-like (From Topology)	T: NE0471 N-terminal domain-like	F: DUF2442	ECOD (1.6)
B	HTH_3_5	e2auwB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_5	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.2020.10	Alpha Beta	2-Layer Sandwich	NE0471 N-terminal domain-like	NE0471-like N-terminal domain	CATH (4.3.0)
A	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
B	3.30.2020.10	Alpha Beta	2-Layer Sandwich	NE0471 N-terminal domain-like	NE0471-like N-terminal domain	CATH (4.3.0)
B	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF10387	Protein of unknown function (DUF2442) (DUF2442)	Protein of unknown function (DUF2442)	This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes th ...	This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	hypothetical protein NE0471	DNA binding binding organic cyclic compound binding nucleic acid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036782	NE0471-like, N-terminal	Homologous Superfamily
A, B	IPR018841	Protein of unknown function DUF2442	Family
A, B	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.