Annotations: 29HB

Cryo-EM structure of the ClpE/ClpP degradation complex from E.faecalis

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
S [auth a]	ClpB_D2-small	e29hba1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
R [auth d]	Lactamase_B	e29hbd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Lactamase_B	ECOD (v295.2)
Q [auth c]	ClpB_D2-small	e29hbc1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
P [auth b]	ClpB_D2-small	e29hbb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
O [auth T]	ClpB_D2-small	e29hbT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
M [auth N]	ClpB_D2-small	e29hbN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
L [auth M]	ClpB_D2-small	e29hbM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
K [auth L]	ClpB_D2-small	e29hbL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
J [auth K]	ClpB_D2-small	e29hbK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
I	Lactamase_B	e29hbI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Lactamase_B	ECOD (v295.2)
A	ClpB_D2-small	e29hbA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, I, J [auth K], K [auth L], L [auth M], M [auth N], N [auth S], O [auth T]	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain
A, B, C, D, E, A, B, C, D, E, F, G, I, J [auth K], K [auth L], L [auth M], M [auth N], N [auth S], O [auth T]	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	ATP-dependent Clp protease, ATP-binding subunit ClpE	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular response to stimulus cellular response to heat response to stimulus cellular response to stress response to stress response to heat response to abiotic stimulus cellular process response to temperature stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm
H	unknown substrate bound to ClpE/ClpP	-	-	-
A, B, C, D, E, A, B, C, D, E, F, G, I, J [auth K], K [auth L], L [auth M], M [auth N], N [auth S], O [auth T]	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process protein catabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm endopeptidase Clp complex protein-containing complex catalytic complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR001270	ClpA/B family	Family
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR018368	ClpA/B, conserved site 1	Conserved Site
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR036876	UVR domain superfamily	Homologous Superfamily
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR041546	ClpA/ClpB, AAA lid domain	Domain
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR050130	ATP-dependent Clp protease/Chaperone ClpA/ClpB	Family
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR028299	ClpA/B, conserved site 2	Conserved Site
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR003593	AAA+ ATPase domain	Domain
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR003959	ATPase, AAA-type, core	Domain
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR001943	UVR domain	Domain
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR019489	Clp ATPase, C-terminal	Domain
P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], P [auth b], Q [auth c], R [auth d], S [auth a], T [auth e], U [auth f]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, I, J [auth K], K [auth L], L [auth M], M [auth N], N [auth S], O [auth T]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, I, J [auth K], K [auth L], L [auth M], M [auth N], N [auth S], O [auth T]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A, B, C, D, E, A, B, C, D, E, F, G, I, J [auth K], K [auth L], L [auth M], M [auth N], N [auth S], O [auth T]	IPR018215	ClpP, Ser active site	Active Site
A, B, C, D, E, A, B, C, D, E, F, G, I, J [auth K], K [auth L], L [auth M], M [auth N], N [auth S], O [auth T]	IPR033135	ClpP, histidine active site	Active Site
A, B, C, D, E, A, B, C, D, E, F, G, I, J [auth K], K [auth L], L [auth M], M [auth N], N [auth S], O [auth T]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family