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 28OE | pdb_000028oe

Human PRC1.4 in complex with native UBCH5C bound to a H3Kc27me3 mononucleosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyCore histone-like 8067126 3001387 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyCore histone-like 8067126 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8096712 3001387 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyCore histone-like 8096712 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRING/U-box like 8079705 3000160 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyUbiquitin-like 8055980 3000157 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyUbiquitin-like 8055976 3000157 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H, L
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
F, J
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
PF00179Ubiquitin-conjugating enzyme (UQ_con)Ubiquitin-conjugating enzymeProteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].
Domain
PF13923Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_2)Zinc finger, C3HC4 type (RING finger)Domain
PF16207RAWUL domain RING finger- and WD40-associated ubiquitin-like (RAWUL)RAWUL domain RING finger- and WD40-associated ubiquitin-likeThe RAWUL domain is found at the C-terminus of poly-comb group RING finger proteins. It is a ubiquitin-like domain [1]. RAWUL binds directly to PUFD, a domain on BCOR proteins (BCL6 corepressor). BCOR has emerged as an important player in developm ...The RAWUL domain is found at the C-terminus of poly-comb group RING finger proteins. It is a ubiquitin-like domain [1]. RAWUL binds directly to PUFD, a domain on BCOR proteins (BCL6 corepressor). BCOR has emerged as an important player in development and health [2].
Domain
PF13923Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_2)Zinc finger, C3HC4 type (RING finger)Domain
PF16207RAWUL domain RING finger- and WD40-associated ubiquitin-like (RAWUL)RAWUL domain RING finger- and WD40-associated ubiquitin-likeThe RAWUL domain is found at the C-terminus of poly-comb group RING finger proteins. It is a ubiquitin-like domain [1]. RAWUL binds directly to PUFD, a domain on BCOR proteins (BCL6 corepressor). BCOR has emerged as an important player in developm ...The RAWUL domain is found at the C-terminus of poly-comb group RING finger proteins. It is a ubiquitin-like domain [1]. RAWUL binds directly to PUFD, a domain on BCOR proteins (BCL6 corepressor). BCOR has emerged as an important player in development and health [2].
Domain
PF17218CBX family C-terminal motif (CBX7_C)CBX family C-terminal motif- Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I, M
Histone H2B
H, L
Histone H2A
G, K
Histone H4 -
F, J
Histone H3
Ubiquitin-conjugating enzyme E2 D3
Polycomb complex protein BMI-1
E3 ubiquitin-protein ligase RING2
Chromobox 7-
DNA (151-MER)---
DNA (151-MER)---
Isoform 2 of Polyhomeotic-like protein 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I, M
IPR009072Histone-foldHomologous Superfamily
I, M
IPR000558Histone H2BFamily
I, M
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
I, M
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
I, M
IPR007125Core Histone H2A/H2B/H3 domainDomain
I, M
IPR055333Histone H2B, conserved siteConserved Site
I, M
IPR005818Linker histone H1/H5, domain H15Domain
H, L
IPR009072Histone-foldHomologous Superfamily
H, L
IPR002119Histone H2AFamily
H, L
IPR032454Histone H2A, C-terminal domainDomain
H, L
IPR032458Histone H2A conserved siteConserved Site
H, L
IPR007125Core Histone H2A/H2B/H3 domainDomain
H, L
IPR061508Histone H2A, histone foldDomain
G, K
IPR009072Histone-foldHomologous Superfamily
G, K
IPR001951Histone H4Family
G, K
IPR035425CENP-T/Histone H4, histone foldDomain
G, K
IPR019809Histone H4, conserved siteConserved Site
G, K
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
F, J
IPR009072Histone-foldHomologous Superfamily
F, J
IPR000164Histone H3/CENP-AFamily
F, J
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR016135Ubiquitin-conjugating enzyme/RWD-likeHomologous Superfamily
IPR000608Ubiquitin-conjugating (UBC), catalytic core domainDomain
IPR023313Ubiquitin-conjugating enzyme, active siteActive Site
IPR017907Zinc finger, RING-type, conserved siteConserved Site
IPR032443RAWUL domainDomain
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR001841Zinc finger, RING-typeDomain
IPR043540E3 ubiquitin-protein ligase RING1/RING2Family
IPR017907Zinc finger, RING-type, conserved siteConserved Site
IPR032443RAWUL domainDomain
IPR037937E3 ubiquitin-protein ligase RING2, RAWUL domainDomain
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR001841Zinc finger, RING-typeDomain
IPR043000Chromobox protein homolog 7Family
IPR000953Chromo/chromo shadow domainDomain
IPR023780Chromo domainDomain
IPR016197Chromo-like domain superfamilyHomologous Superfamily
IPR017984Chromo domain subgroupDomain
IPR033773CBX family C-terminal motifConserved Site
IPR023779Chromo domain, conserved siteConserved Site
IPR013761Sterile alpha motif/pointed domain superfamilyHomologous Superfamily
IPR050548Polycomb group and chromatin remodeling factorsFamily
IPR012313Zinc finger, FCS-typeDomain
IPR038603FCS-type zinc finger superfamilyHomologous Superfamily
IPR001660Sterile alpha motif domainDomain