1ZY3

Structural model of complex of Bcl-w protein with Bid BH3-peptide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1zy3a1	Membrane and cell surface proteins and peptides	Toxins' membrane translocation domains	Bcl-2 inhibitors of programmed cell death	Bcl-2 inhibitors of programmed cell death	Apoptosis regulator Bcl-w	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Bcl-2 inhibitors of programmed cell death	8024011	4002981	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bcl-2-like inhibitors of programmed cell death	8036390	3001974	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00452,PF02180	e1zy3A1	A: alpha arrays	X: Toxins' membrane translocation domains	H: Bcl-2 inhibitors of programmed cell death (From Topology)	T: Bcl-2 inhibitors of programmed cell death	F: PF00452,PF02180	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.437.10	Mainly Alpha	Orthogonal Bundle	Apoptosis Regulator Bcl-x	Blc2-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02180	Bcl-2 homology region 4 (BH4)	Bcl-2 homology region 4	-	Family
A	PF00452	Apoptosis regulator proteins, Bcl-2 family (Bcl-2)	Apoptosis regulator proteins, Bcl-2 family	-	Family
B	PF06393	BH3 interacting domain (BID) (BID)	BH3 interacting domain (BID)	BID is a member of the BCL-2 superfamily of proteins are key regulators of programmed cell death, hence this family is related to Pfam:PF00452 . BID is a pro-apoptotic member of the Bcl-2 superfamily and as such posses the ability to target intrace ...	BID is a member of the BCL-2 superfamily of proteins are key regulators of programmed cell death, hence this family is related to Pfam:PF00452 . BID is a pro-apoptotic member of the Bcl-2 superfamily and as such posses the ability to target intracellular membranes and contains the BH3 death domain. The activity of BID is regulated by a Caspase 8-mediated cleavage event, exposing the BH3 domain and significantly changing the surface charge and hydrophobicity, which causes a change of cellular localisation [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Apoptosis regulator Bcl-W	protein heterodimerization activity protein binding binding protein dimerization activity BH domain binding protein domain specific binding identical protein binding protein homodimerization activity protein-containing complex binding disordered domain specific binding	developmental process multicellular organismal process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation reproduction multicellular organism reproduction regulation of biological process regulation of cellular process negative regulation of programmed cell death developmental process multicellular organismal process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation reproduction multicellular organism reproduction regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death response to stimulus response to stress response to ischemia Sertoli cell proliferation cell population proliferation gonad development reproductive system development sex differentiation animal organ development male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development epithelial cell proliferation system development cellular response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction regulation of intrinsic apoptotic signaling pathway intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction negative regulation of apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction negative regulation of intrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway signal transduction in absence of ligand cell surface receptor signaling pathway extrinsic apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand regulation of cellular component organization apoptotic mitochondrial changes regulation of release of cytochrome c from mitochondria negative regulation of mitochondrion organization cellular component organization negative regulation of release of cytochrome c from mitochondria cellular component organization or biogenesis mitochondrion organization negative regulation of cellular component organization regulation of organelle organization organelle organization release of cytochrome c from mitochondria negative regulation of organelle organization regulation of mitochondrion organization cellular response to stress DNA damage response intrinsic apoptotic signaling pathway in response to DNA damage membrane organization negative regulation of mitochondrial membrane permeability transport establishment of localization mitochondrial membrane organization localization negative regulation of membrane permeability regulation of membrane permeability regulation of biological quality regulation of mitochondrial membrane permeability mitochondrial transport cellular response to nitrogen compound cellular response to acid chemical cellular response to amino acid stimulus response to organic substance response to glycine response to organonitrogen compound response to endogenous stimulus response to oxygen-containing compound response to nitrogen compound response to amino acid cellular response to glycine cellular response to oxygen-containing compound cellular response to endogenous stimulus response to acid chemical cellular response to chemical stimulus cellular response to organonitrogen compound response to chemical cellular response to organic substance response to lipid cellular response to organic cyclic compound cellular response to lipid response to estradiol cellular response to estradiol stimulus response to organic cyclic compound cellular response to amyloid-beta response to peptide cellular response to peptide response to amyloid-beta	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex Bcl-2 family protein complex membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex Bcl-2 family protein complex membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope bounding membrane of organelle organelle mitochondrial envelope mitochondrial outer membrane outer membrane envelope organelle membrane
B	BH3-peptide from BH3 interacting domain death agonist protein	enzyme regulator activity molecular function regulator activity cysteine-type endopeptidase regulator activity involved in apoptotic process protein binding binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding death receptor binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein localization establishment of protein localization cellular localization protein targeting establishment of localization localization establishment of protein localization to organelle cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein localization establishment of protein localization cellular localization protein targeting establishment of localization localization establishment of protein localization to organelle cellular macromolecule localization macromolecule localization protein localization to organelle protein localization to mitochondrion protein targeting to mitochondrion establishment of protein localization to mitochondrion organelle organization apoptotic mitochondrial changes apoptotic process cell death programmed cell death mitochondrion organization cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular response to stress DNA damage response response to stress signal transduction in response to DNA damage signal transduction multicellular organismal process regulation of leukocyte activation regulation of cell activation lymphocyte activation leukocyte proliferation leukocyte activation T cell activation lymphocyte proliferation regulation of multicellular organismal process regulation of immune system process T cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation cell activation regulation of T cell activation regulation of T cell proliferation regulation of cell population proliferation mononuclear cell proliferation immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process regulation of release of cytochrome c from mitochondria positive regulation of release of cytochrome c from mitochondria positive regulation of mitochondrion organization positive regulation of cellular process regulation of organelle organization apoptotic signaling pathway release of cytochrome c from mitochondria regulation of mitochondrion organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction extrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway positive regulation of response to stimulus regulation of signaling cell surface receptor signaling pathway positive regulation of extrinsic apoptotic signaling pathway regulation of extrinsic apoptotic signaling pathway regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway positive regulation of signaling regulation of mitochondrial membrane potential positive regulation of mitochondrial membrane potential regulation of biological quality positive regulation of membrane potential regulation of membrane potential extrinsic apoptotic signaling pathway via death domain receptors fibroblast apoptotic process positive regulation of fibroblast apoptotic process regulation of fibroblast apoptotic process regulation of epithelial cell proliferation epithelial cell proliferation hepatocyte apoptotic process epithelial cell apoptotic process neuron apoptotic process regulation of intrinsic apoptotic signaling pathway regulation of intracellular signal transduction intrinsic apoptotic signaling pathway positive regulation of intracellular signal transduction positive regulation of intrinsic apoptotic signaling pathway aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy respiratory electron transport chain metabolic process mitochondrial ATP synthesis coupled electron transport establishment of protein localization to membrane localization within membrane protein localization to membrane supramolecular fiber organization transport mitochondrial outer membrane permeabilization involved in programmed cell death mitochondrial membrane organization positive regulation of mitochondrial membrane permeability involved in apoptotic process positive regulation of mitochondrial membrane permeability positive regulation of membrane permeability regulation of mitochondrial membrane permeability mitochondrial transport membrane organization regulation of membrane permeability regulation of mitochondrial membrane permeability involved in apoptotic process mitochondrial outer membrane permeabilization negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of cellular response to stress regulation of intrinsic apoptotic signaling pathway in response to DNA damage negative regulation of cell communication negative regulation of apoptotic signaling pathway regulation of response to stress negative regulation of cellular process intrinsic apoptotic signaling pathway in response to DNA damage negative regulation of response to stimulus negative regulation of programmed cell death negative regulation of signal transduction negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage negative regulation of intrinsic apoptotic signaling pathway negative regulation of apoptotic process regulation of cell cycle phase transition regulation of cell cycle process cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle regulation of mitotic cell cycle phase transition regulation of mitotic cell cycle regulation of G1/S transition of mitotic cell cycle mitotic cell cycle process cell cycle regulation of cell cycle G1/S transition of mitotic cell cycle cell cycle process mitotic cell cycle phase transition	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane cytosol mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane cytosol mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane envelope organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR020726	Apoptosis regulator, Bcl-2, BH2 motif, conserved site	Conserved Site
A	IPR036834	Bcl-2-like superfamily	Homologous Superfamily
A	IPR046371	Bcl-2, Bcl-2 homology region 1-3	Domain
A	IPR003093	Apoptosis regulator, Bcl-2 protein, BH4	Domain
A	IPR002475	Bcl2-like	Family
A	IPR020731	Apoptosis regulator, Bcl-2, BH4 motif, conserved site	Conserved Site
A	IPR026298	Bcl-2 family	Family
A	IPR020717	Apoptosis regulator, Bcl-2, BH1 motif, conserved site	Conserved Site
A	IPR013280	Apoptosis regulator, Bcl-W	Family
B	IPR036834	Bcl-2-like superfamily	Homologous Superfamily
B	IPR010479	BH3-interacting domain death agonist	Family
B	IPR020728	Apoptosis regulator, Bcl-2, BH3 motif, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q92843	psoriasis acute myeloid leukemia atypical teratoid rhabdoid tumor glioblastoma lung adenocarcinoma malignant glioma oligodendroglioma pilocytic astrocytoma astrocytic tumor B-cell chronic lymphocytic leukemia invasive ductal breast carcinoma malignant colon neoplasm Malignant lymphoma - small lymphocytic osteosarcoma primitive neuroectodermal tumor psoriasis acute myeloid leukemia atypical teratoid rhabdoid tumor glioblastoma lung adenocarcinoma malignant glioma oligodendroglioma pilocytic astrocytoma astrocytic tumor B-cell chronic lymphocytic leukemia invasive ductal breast carcinoma malignant colon neoplasm Malignant lymphoma - small lymphocytic osteosarcoma primitive neuroectodermal tumor atrial fibrillation facioscapulohumeral muscular dystrophy large cell medulloblastoma malignant ependymoma medulloblastoma ovarian cancer
B	Pharos: P55957	psoriasis atypical teratoid rhabdoid tumor breast carcinoma gastric cancer hepatocellular carcinoma lung cancer Malignant neoplasm of stomach oligodendroglioma schizophrenia B-cell chronic lymphocytic leukemia Crohn disease gastric carcinoma hereditary diffuse gastric adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm psoriasis atypical teratoid rhabdoid tumor breast carcinoma gastric cancer hepatocellular carcinoma lung cancer Malignant neoplasm of stomach oligodendroglioma schizophrenia B-cell chronic lymphocytic leukemia Crohn disease gastric carcinoma hereditary diffuse gastric adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm ovarian cancer tuberculosis bipolar disorder esophageal adenocarcinoma gastric neoplasm malignant mesothelioma medulloblastoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.