1Z6O | pdb_00001z6o

Crystal Structure of Trichoplusia ni secreted ferritin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1z6oa1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
B	d1z6ob_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
D	d1z6od_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
E	d1z6oe_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
F	d1z6of_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
G	d1z6og_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
H	d1z6oh_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
J	d1z6oj_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
K	d1z6ok_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
L	d1z6ol_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
I	d1z6oi_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
C	d1z6oc_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
M	d1z6om1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
N	d1z6on_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
O	d1z6oo_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
Q	d1z6oq_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
R	d1z6or_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
S	d1z6os_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
T	d1z6ot_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
U	d1z6ou_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
V	d1z6ov_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
W	d1z6ow_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
X	d1z6ox_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)
P	d1z6op_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Trichoplusia ni ) [TaxId: 7111 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Ferritin	8022852	4000839	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ferritin-like	8035232	3001658	SCOP2 (2022-06-29)
M	SCOP2 Family	Ferritin	8022858	4000839	SCOP2 (2022-06-29)
M	SCOP2 Superfamily	Ferritin-like	8035238	3001658	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rubrerythrin	e1z6oA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Rubrerythrin	ECOD (v294.1)
B		e1z6oB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
D		e1z6oD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
E		e1z6oE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
F		e1z6oF1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
G		e1z6oG1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
H		e1z6oH1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
J		e1z6oJ1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
K		e1z6oK1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
L		e1z6oL1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
I		e1z6oI1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
C		e1z6oC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
M	Rubrerythrin	e1z6oM1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Rubrerythrin	ECOD (v294.1)
N		e1z6oN1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
O		e1z6oO1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
Q		e1z6oQ1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
R		e1z6oR1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
S		e1z6oS1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
T		e1z6oT1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
U		e1z6oU1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
V		e1z6oV1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
W		e1z6oW1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
X		e1z6oX1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
P		e1z6oP1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
M	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
N	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
O	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
Q	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
R	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
S	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
T	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
U	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
V	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
W	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
X	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
P	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Ferritin light chain	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system extracellular region
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	Ferritin heavy chain	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009040	Ferritin-like diiron domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001519	Ferritin	Family
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR009040	Ferritin-like diiron domain	Domain
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR012347	Ferritin-like	Homologous Superfamily
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR009078	Ferritin-like superfamily	Homologous Superfamily
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR008331	Ferritin/DPS domain	Domain
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR001519	Ferritin	Family