1YJG | pdb_00001yjg

Variable Small Protein 1 of Borrelia turicatae (VspA or Vsp1)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth E]	d1yjge_	All alpha proteins	Four-helical up-and-down bundle	Outer surface protein C (OspC)	automated matches	automated matches	(Borrelia turicatae ) [TaxId: 142 ],	SCOPe (2.08)
C [auth D]	d1yjgd_	All alpha proteins	Four-helical up-and-down bundle	Outer surface protein C (OspC)	automated matches	automated matches	(Borrelia turicatae ) [TaxId: 142 ],	SCOPe (2.08)
B	d1yjgb_	All alpha proteins	Four-helical up-and-down bundle	Outer surface protein C (OspC)	automated matches	automated matches	(Borrelia turicatae ) [TaxId: 142 ],	SCOPe (2.08)
A	d1yjga_	All alpha proteins	Four-helical up-and-down bundle	Outer surface protein C (OspC)	automated matches	automated matches	(Borrelia turicatae ) [TaxId: 142 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth E]	SCOP2B Superfamily	Outer surface protein C (OspC)	8088450	3001976	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Outer surface protein C (OspC)	8088450	3001976	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Outer surface protein C (OspC)	8088450	3001976	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Outer surface protein C (OspC)	8088450	3001976	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth E]	MATH_2	e1yjgE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MATH_2	ECOD (v294.1)
C [auth D]	MATH_2	e1yjgD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MATH_2	ECOD (v294.1)
B	MATH_2	e1yjgB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MATH_2	ECOD (v294.1)
A	MATH_2	e1yjgA1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MATH_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth E]	1.20.120.240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Lipoprotein, type 6	CATH (4.3.0)
C [auth D]	1.20.120.240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Lipoprotein, type 6	CATH (4.3.0)
B	1.20.120.240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Lipoprotein, type 6	CATH (4.3.0)
A	1.20.120.240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Lipoprotein, type 6	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D], D [auth E]	Surface protein VspA	-	-	cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], D [auth E]	IPR001800	Lipoprotein, OspC-type	Family
A, B, C [auth D], D [auth E]	IPR036437	Outer surface protein C-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.