1YJG | pdb_00001yjg

Variable Small Protein 1 of Borrelia turicatae (VspA or Vsp1)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth E]	d1yjge_	All alpha proteins	Four-helical up-and-down bundle	Outer surface protein C (OspC)	automated matches	automated matches	(Borrelia turicatae ) [TaxId: 142 ],	SCOPe (2.08)
C [auth D]	d1yjgd_	All alpha proteins	Four-helical up-and-down bundle	Outer surface protein C (OspC)	automated matches	automated matches	(Borrelia turicatae ) [TaxId: 142 ],	SCOPe (2.08)
B	d1yjgb_	All alpha proteins	Four-helical up-and-down bundle	Outer surface protein C (OspC)	automated matches	automated matches	(Borrelia turicatae ) [TaxId: 142 ],	SCOPe (2.08)
A	d1yjga_	All alpha proteins	Four-helical up-and-down bundle	Outer surface protein C (OspC)	automated matches	automated matches	(Borrelia turicatae ) [TaxId: 142 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth E]	SCOP2B Superfamily	Outer surface protein C (OspC)	8088450	3001976	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Outer surface protein C (OspC)	8088450	3001976	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Outer surface protein C (OspC)	8088450	3001976	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Outer surface protein C (OspC)	8088450	3001976	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth E]	Lipoprotein_6	e1yjgE1	A: alpha bundles	X: Four-helical up-and-down bundle	H: Outer surface protein C (OspC) (From Topology)	T: Outer surface protein C (OspC)	F: Lipoprotein_6	ECOD (1.6)
C [auth D]	Lipoprotein_6	e1yjgD1	A: alpha bundles	X: Four-helical up-and-down bundle	H: Outer surface protein C (OspC) (From Topology)	T: Outer surface protein C (OspC)	F: Lipoprotein_6	ECOD (1.6)
B	Lipoprotein_6	e1yjgB1	A: alpha bundles	X: Four-helical up-and-down bundle	H: Outer surface protein C (OspC) (From Topology)	T: Outer surface protein C (OspC)	F: Lipoprotein_6	ECOD (1.6)
A	Lipoprotein_6	e1yjgA1	A: alpha bundles	X: Four-helical up-and-down bundle	H: Outer surface protein C (OspC) (From Topology)	T: Outer surface protein C (OspC)	F: Lipoprotein_6	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth E]	1.20.120.240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Lipoprotein, type 6	CATH (4.3.0)
C [auth D]	1.20.120.240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Lipoprotein, type 6	CATH (4.3.0)
B	1.20.120.240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Lipoprotein, type 6	CATH (4.3.0)
A	1.20.120.240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Lipoprotein, type 6	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth D], D [auth E]	PF01441	Lipoprotein (Lipoprotein_6)	Lipoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D], D [auth E]	Surface protein VspA	-	-	cell periphery cell outer membrane cellular anatomical structure external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], D [auth E]	IPR001800	Lipoprotein, OspC-type	Family
A, B, C [auth D], D [auth E]	IPR036437	Outer surface protein C-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.