1WPB | pdb_00001wpb

Structure of Escherichia coli yfbU gene product

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
M	d1wpbm_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
P	d1wpbp_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
O	d1wpbo_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
N	d1wpbn_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
L	d1wpbl_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
K	d1wpbk_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
J	d1wpbj_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
I	d1wpbi_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
H	d1wpbh_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
G	d1wpbg_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
F	d1wpbf_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
E	d1wpbe_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
D	d1wpbd_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d1wpbc_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d1wpbb_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d1wpba_	All alpha proteins	YfbU-like	YfbU-like	YfbU-like	Hypothetical protein YfbU	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
M	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YfbU-like	8043660	3000191	SCOP2B (2022-06-29)
A	SCOP2 Family	YfbU-like	8031282	4003036	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YfbU-like	8043660	3000191	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
M	Alpha-2-MRAP_N	e1wpbM1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
M	Tryp_alpha_amyl	e1wpbM2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
P	Alpha-2-MRAP_N	e1wpbP1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
P	Tryp_alpha_amyl	e1wpbP2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
O	Alpha-2-MRAP_N	e1wpbO1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
O	Tryp_alpha_amyl	e1wpbO2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
N	Alpha-2-MRAP_N	e1wpbN1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
N	Tryp_alpha_amyl	e1wpbN2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
L	Alpha-2-MRAP_N	e1wpbL1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
L	Tryp_alpha_amyl	e1wpbL2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
K	Alpha-2-MRAP_N	e1wpbK1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
K	Tryp_alpha_amyl	e1wpbK2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
J	Alpha-2-MRAP_N	e1wpbJ1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
J	Tryp_alpha_amyl	e1wpbJ2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
I	Alpha-2-MRAP_N	e1wpbI1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
I	Tryp_alpha_amyl	e1wpbI2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
H	Alpha-2-MRAP_N	e1wpbH1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
H	Tryp_alpha_amyl	e1wpbH2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
G	Alpha-2-MRAP_N	e1wpbG1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
G	Tryp_alpha_amyl	e1wpbG2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
F	Alpha-2-MRAP_N	e1wpbF1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
F	Tryp_alpha_amyl	e1wpbF2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
E	Alpha-2-MRAP_N	e1wpbE1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
E	Tryp_alpha_amyl	e1wpbE2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
D	Alpha-2-MRAP_N	e1wpbD1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
D	Tryp_alpha_amyl	e1wpbD2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
C	Alpha-2-MRAP_N	e1wpbC1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
C	Tryp_alpha_amyl	e1wpbC2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
B	Alpha-2-MRAP_N	e1wpbB1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (v295)
B	Tryp_alpha_amyl	e1wpbB2	A: alpha arrays	X: Urease, gamma-subunit	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v295)
A	YfbU	e1wpbA1	A: alpha arrays	X: YfbU-like, C-terminal subdomain	H: YfbU-like, C-terminal subdomain	T: YfbU-like, C-terminal subdomain	F: YfbU	ECOD (v295)
A	YfbU	e1wpbA2	A: alpha bundles	X: YfbU-like, N-terminal subdomain	H: YfbU-like, N-terminal subdomain	T: YfbU-like, N-terminal subdomain	F: YfbU	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
M	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
M	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
P	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
P	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
O	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
O	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
N	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
N	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
L	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
L	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
K	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
K	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
J	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
J	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
I	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
I	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
H	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
H	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
G	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
G	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
F	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
F	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
E	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
E	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
D	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
D	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
C	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
C	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
B	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
B	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)
A	1.10.287.680	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
A	1.10.3190.10	Mainly Alpha	Orthogonal Bundle	yfbu gene product, domain 2	yfbu gene product, domain 2	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR005587	Uncharacterised protein family UPF0304, YfbU	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR023146	YfbU, alpha-helical bundle domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR023145	YfbU, helix-hairpin domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.