Annotations: 1W8X

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1w8xd_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
A	d1w8xa_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
B	d1w8xb_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
C	d1w8xc_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
E	d1w8xe_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
F	d1w8xf_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
G	d1w8xg_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
H	d1w8xh_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
I	d1w8xi_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
J	d1w8xj_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
K	d1w8xk_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
L	d1w8xl_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
M	d1w8xm_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
N	d1w8xn_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
O [auth P]	d1w8xp_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Phage_Capsid_P3_2nd	e1w8xD2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
D	Phage_Capsid_P3_1st	e1w8xD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
A	Phage_Capsid_P3_2nd	e1w8xA2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
A	Phage_Capsid_P3_1st	e1w8xA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
B	Phage_Capsid_P3_2nd	e1w8xB2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
B	Phage_Capsid_P3_1st	e1w8xB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
C	Phage_Capsid_P3_2nd	e1w8xC2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
C	Phage_Capsid_P3_1st	e1w8xC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
E	Phage_Capsid_P3_2nd	e1w8xE2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
E	Phage_Capsid_P3_1st	e1w8xE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
F	Phage_Capsid_P3_2nd	e1w8xF2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
F	Phage_Capsid_P3_1st	e1w8xF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
G	Phage_Capsid_P3_2nd	e1w8xG2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
G	Phage_Capsid_P3_1st	e1w8xG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
H	Phage_Capsid_P3_2nd	e1w8xH2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
H	Phage_Capsid_P3_1st	e1w8xH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
I	Phage_Capsid_P3_2nd	e1w8xI2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
I	Phage_Capsid_P3_1st	e1w8xI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
J	Phage_Capsid_P3_2nd	e1w8xJ2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
J	Phage_Capsid_P3_1st	e1w8xJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
K	Phage_Capsid_P3_2nd	e1w8xK2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
K	Phage_Capsid_P3_1st	e1w8xK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
L	Phage_Capsid_P3_2nd	e1w8xL2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
L	Phage_Capsid_P3_1st	e1w8xL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
M	Tecti-min-caps	e1w8xM1	A: few secondary structure elements	X: Protein P30 (From Topology)	H: Protein P30 (From Topology)	T: Protein P30	F: Tecti-min-caps	ECOD (1.6)
N	DUF1859	e1w8xN1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF1859	ECOD (1.6)
O [auth P]	DUF1970	e1w8xP1	A: few secondary structure elements	X: Protein P16 (From Topology)	H: Protein P16 (From Topology)	T: Protein P16	F: DUF1970	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF09018	P3 major capsid protein (Phage_Capsid_P3)	P3 major capsid protein	The P3 major capsid protein adopts a 'double-barrel' structure comprising two eight-stranded viral beta-barrels or jelly rolls, each of which contains a 12-residue alpha-helix. This protein then trimerises through a 'trimerisation loop' sequence, and ...	The P3 major capsid protein adopts a 'double-barrel' structure comprising two eight-stranded viral beta-barrels or jelly rolls, each of which contains a 12-residue alpha-helix. This protein then trimerises through a 'trimerisation loop' sequence, and is incorporated within the viral capsid [1].	Domain
M	PF09300	Tectiviridae, minor capsid (Tecti-min-caps)	Tectiviridae, minor capsid	Members of this family form the minor capsid protein of various Tectiviridae [1].	Domain
N	PF08948	Bacteriophage PRD1, P5, spike N-terminal (PRD1_P5_spike_N)	Bacteriophage PRD1, P5, spike N-terminal	The spike structure of bacteriophage PRD1 is comprised of proteins P2, P5, and P31. P5 is an elongated multidomain trimer. This domain is found at the N-terminal of bacteriophage PRD1 spike protein P5 and mediates the interaction with protein P31. Th ...	The spike structure of bacteriophage PRD1 is comprised of proteins P2, P5, and P31. P5 is an elongated multidomain trimer. This domain is found at the N-terminal of bacteriophage PRD1 spike protein P5 and mediates the interaction with protein P31. The C-terminal domain appears to contain the residues responsible for the trimerization of the protein [1,2].	Domain
O [auth P]	PF09301	Domain of unknown function (DUF1970) (DUF1970)	Domain of unknown function (DUF1970)	Members of this family consist of various uncharacterised viral hypothetical proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	MAJOR CAPSID PROTEIN (PROTEIN P3)	-	-	viral capsid virion component
M	PROTEIN P30	-	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component
N	PROTEIN P31	-	-	viral capsid virion component
O [auth P]	PROTEIN P16	-	-	membrane cellular anatomical entity virion component viral membrane viral inner membrane virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR015108	Bacteriophage PRD1, P3	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016115	Bacteriophage PRD1, P3, N-terminal	Homologous Superfamily
M	IPR015379	Tectiviridae, minor capsid	Family
N	IPR015043	Bacteriophage PRD1, P5, spike N-terminal	Domain