Annotations: 1W8X

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
O [auth P]	d1w8xp_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
N	d1w8xn_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
M	d1w8xm_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
L	d1w8xl_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
K	d1w8xk_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
J	d1w8xj_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
I	d1w8xi_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
H	d1w8xh_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
G	d1w8xg_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
F	d1w8xf_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
E	d1w8xe_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
D	d1w8xd_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
C	d1w8xc_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
B	d1w8xb_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
A	d1w8xa_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	PRD1 capsid assembly	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O [auth P]	DUF1970	e1w8xP1	A: alpha bundles	X: Protein P16	H: Protein P16	T: Protein P16	F: DUF1970	ECOD (develop294)
N	PRD1_P5_spike_N	e1w8xN1	A: alpha bundles	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: PRD1_P5_spike_N	ECOD (develop294)
M	Tecti-min-caps	e1w8xM1	A: alpha bundles	X: Protein P30	H: Protein P30	T: Protein P30	F: Tecti-min-caps	ECOD (develop294)
L	tRNA-synt_1b	e1w8xL1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
K	tRNA-synt_1b	e1w8xK1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
J	tRNA-synt_1b	e1w8xJ1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
I	tRNA-synt_1b	e1w8xI1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
H	tRNA-synt_1b	e1w8xH1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
G	tRNA-synt_1b	e1w8xG1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
F	tRNA-synt_1b	e1w8xF1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
E	tRNA-synt_1b	e1w8xE1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
D	tRNA-synt_1b	e1w8xD1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
C	tRNA-synt_1b	e1w8xC1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
B	tRNA-synt_1b	e1w8xB1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (develop294)
A	YbeY	e1w8xA1	A: alpha bundles	X: Globin-like	H: Ring-building motif I in type III secretion system	T: Ring-building motif I in type III secretion system	F: YbeY	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
O [auth P]	PF09301	Domain of unknown function (DUF1970) (DUF1970)	Domain of unknown function (DUF1970)	Members of this family consist of various uncharacterised viral hypothetical proteins.	Domain
M	PF09300	Tectiviridae, minor capsid (Tecti-min-caps)	Tectiviridae, minor capsid	Members of this family form the minor capsid protein of various Tectiviridae [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF25514	P3 major capsid protein C-terminal (P3_C)	P3 major capsid protein C-terminal	The P3 major capsid protein adopts a 'double-sandwich' structure comprising two eight-stranded viral beta-sandwich domains with jellyroll fold, each of which contains a 12-residue alpha-helix. This protein trimerises through a 'trimerisation loop' se ...	The P3 major capsid protein adopts a 'double-sandwich' structure comprising two eight-stranded viral beta-sandwich domains with jellyroll fold, each of which contains a 12-residue alpha-helix. This protein trimerises through a 'trimerisation loop' sequence, and is incorporated within the viral capsid [1]. This entry represents the C-terminal domain of the P3 protein.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
O [auth P]	PROTEIN P16	-	-	virion component viral membrane viral inner membrane virion membrane
N	PROTEIN P31	-	-	viral capsid virion component
M	PROTEIN P30	-	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	MAJOR CAPSID PROTEIN (PROTEIN P3)	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
N	IPR015043	Bacteriophage PRD1, P5, spike N-terminal	Domain
M	IPR015379	Minor capsid protein P30, tectiviridae	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR015108	P3, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR057669	P3, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016115	Bacteriophage PRD1, P3, N-terminal	Homologous Superfamily