1W8X
Structural analysis of PRD1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
H | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
H | PF09018 | e1w8xH2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
A | PF09018 | e1w8xA2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
B | PF09018 | e1w8xB2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
C | PF09018 | e1w8xC2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
D | PF09018 | e1w8xD2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
E | PF09018 | e1w8xE2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
F | PF09018 | e1w8xF2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
G | PF09018 | e1w8xG2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
I | PF09018 | e1w8xI2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
J | PF09018 | e1w8xJ2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
K | PF09018 | e1w8xK2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
L | PF09018 | e1w8xL2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF09018 | ECOD (1.6) |
M | PF09300 | e1w8xM1 | A: few secondary structure elements | X: Protein P30 (From Topology) | H: Protein P30 (From Topology) | T: Protein P30 | F: PF09300 | ECOD (1.6) |
N | PF08948 | e1w8xN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF08948 | ECOD (1.6) |
O [auth P] | PF09301 | e1w8xP1 | A: few secondary structure elements | X: Protein P16 (From Topology) | H: Protein P16 (From Topology) | T: Protein P16 | F: PF09301 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09018 | P3 major capsid protein (Phage_Capsid_P3) | P3 major capsid protein | The P3 major capsid protein adopts a 'double-barrel' structure comprising two eight-stranded viral beta-barrels or jelly rolls, each of which contains a 12-residue alpha-helix. This protein then trimerises through a 'trimerisation loop' sequence, and ... | Domain | |
PF09300 | Tectiviridae, minor capsid (Tecti-min-caps) | Tectiviridae, minor capsid | Members of this family form the minor capsid protein of various Tectiviridae [1]. | Domain | |
PF08948 | Bacteriophage PRD1, P5, spike N-terminal (PRD1_P5_spike_N) | Bacteriophage PRD1, P5, spike N-terminal | The spike structure of bacteriophage PRD1 is comprised of proteins P2, P5, and P31. P5 is an elongated multidomain trimer. This domain is found at the N-terminal of bacteriophage PRD1 spike protein P5 and mediates the interaction with protein P31. Th ... | Domain | |
O [auth P] | PF09301 | Domain of unknown function (DUF1970) (DUF1970) | Domain of unknown function (DUF1970) | Members of this family consist of various uncharacterised viral hypothetical proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
MAJOR CAPSID PROTEIN (PROTEIN P3) | - | - | ||
PROTEIN P30 | - | |||
PROTEIN P31 | - | - | ||
O [auth P] | PROTEIN P16 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR016112 | Group II dsDNA virus coat/capsid protein | Homologous Superfamily | |
IPR015108 | Bacteriophage PRD1, P3 | Family | |
IPR016115 | Bacteriophage PRD1, P3, N-terminal | Homologous Superfamily | |
IPR015379 | Tectiviridae, minor capsid | Family | |
IPR015043 | Bacteriophage PRD1, P5, spike N-terminal | Domain |