The Atomic Structure of Rice dwarf Virus (RDV)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| O [auth T] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| O [auth T] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| O [auth T] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| N [auth J] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| N [auth J] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| N [auth J] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| M [auth I] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| M [auth I] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| M [auth I] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| L [auth S] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| L [auth S] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| L [auth S] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| K [auth H] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| K [auth H] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| K [auth H] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| J [auth G] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| J [auth G] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| J [auth G] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| I [auth R] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| I [auth R] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| I [auth R] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| H [auth F] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| H [auth F] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| H [auth F] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| G [auth E] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| G [auth E] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| G [auth E] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| F [auth Q] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| F [auth Q] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| F [auth Q] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| E [auth D] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| E [auth D] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| E [auth D] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| D [auth C] | SCOP2 Family | Phytoreovirus capsid | 8029376 | 4000733 | SCOP2 (2022-06-29) |
| D [auth C] | SCOP2 Family | Top domain of rotavirus capsid protein-like | 8029377 | 4002501 | SCOP2 (2022-06-29) |
| D [auth C] | SCOP2 Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2 (2022-06-29) |
| D [auth C] | SCOP2 Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2 (2022-06-29) |
| C [auth P] | SCOP2B Superfamily | Top domain of rotavirus capsid protein-like | 8041756 | 3002477 | SCOP2B (2022-06-29) |
| C [auth P] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| C [auth P] | SCOP2B Superfamily | A virus capsid protein alpha-helical domain | 8041755 | 3001154 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Reovirus inner layer core protein p3 | 8041754 | 3001935 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Phytoreovirus core | 8029375 | 4001662 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Reovirus inner layer core protein p3 | 8041754 | 3001935 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| O [auth T] | TPK_B1_binding | e1uf2T1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| O [auth T] | e1uf2T2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| N [auth J] | TPK_B1_binding | e1uf2J1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| N [auth J] | e1uf2J2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| M [auth I] | TPK_B1_binding | e1uf2I1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| M [auth I] | e1uf2I2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| L [auth S] | TPK_B1_binding | e1uf2S1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| L [auth S] | e1uf2S2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| K [auth H] | TPK_B1_binding | e1uf2H1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| K [auth H] | e1uf2H2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| J [auth G] | TPK_B1_binding | e1uf2G1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| J [auth G] | e1uf2G2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| I [auth R] | TPK_B1_binding | e1uf2R1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| I [auth R] | e1uf2R2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| H [auth F] | TPK_B1_binding | e1uf2F1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| H [auth F] | e1uf2F2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| G [auth E] | TPK_B1_binding | e1uf2E1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| G [auth E] | e1uf2E2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| F [auth Q] | TPK_B1_binding | e1uf2Q1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| F [auth Q] | e1uf2Q2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| E [auth D] | TPK_B1_binding | e1uf2D1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| E [auth D] | e1uf2D2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| D [auth C] | Orbi_VP7 | e1uf2C1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain | T: Viral protein domain | F: Orbi_VP7 | ECOD (v294.1) |
| D [auth C] | Phytoreo_P8 | e1uf2C2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain | H: A virus capsid protein alpha-helical domain | T: A virus capsid protein alpha-helical domain | F: Phytoreo_P8 | ECOD (v294.1) |
| C [auth P] | TPK_B1_binding | e1uf2P1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: TPK_B1_binding | ECOD (v294.1) |
| C [auth P] | e1uf2P2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Flavivirus capsid protein C | T: Flavivirus capsid protein C | F: | ECOD (v294.1) | |
| B | PilN | e1uf2B1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: PilN | ECOD (v294.1) |
| A | RDV-p3 | e1uf2A1 | A: few secondary structure elements | X: Inner layer core protein p3-related | H: Inner layer core protein p3-related | T: Inner layer core protein p3-related | F: RDV-p3 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| O [auth T] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| N [auth J] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| M [auth I] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| L [auth S] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| K [auth H] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| J [auth G] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| I [auth R] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| H [auth F] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| G [auth E] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| F [auth Q] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| E [auth D] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| D [auth C] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| C [auth P] | 2.60.120.170 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| P [auth K] | IPR009873 | Phytoreovirus S7 | Family |
| IPR008935 | Virus capsid protein, alpha-helical | Homologous Superfamily | |
| IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily | |
| IPR009807 | Phytoreovirus outer capsid P8 | Family | |
| IPR015312 | Inner layer core protein VP3, Phytoreovirus | Family | |
| IPR016029 | Inner layer core protein VP3, Reovirus | Homologous Superfamily |














