1UF2 | pdb_00001uf2

The Atomic Structure of Rice dwarf Virus (RDV)


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
O [auth T]d1uf2t1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
O [auth T]d1uf2t2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
N [auth J]d1uf2j1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
N [auth J]d1uf2j2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
M [auth I]d1uf2i1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
M [auth I]d1uf2i2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
L [auth S]d1uf2s1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
L [auth S]d1uf2s2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
K [auth H]d1uf2h1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
K [auth H]d1uf2h2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
J [auth G]d1uf2g1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
J [auth G]d1uf2g2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
I [auth R]d1uf2r1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
I [auth R]d1uf2r2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
H [auth F]d1uf2f1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
H [auth F]d1uf2f2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
G [auth E]d1uf2e1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
G [auth E]d1uf2e2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
F [auth Q]d1uf2q1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
F [auth Q]d1uf2q2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
E [auth D]d1uf2d1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
E [auth D]d1uf2d2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
D [auth C]d1uf2c1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
D [auth C]d1uf2c2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
C [auth P]d1uf2p1 All alpha proteins A virus capsid protein alpha-helical domain A virus capsid protein alpha-helical domain Phytoreovirus capsid RDV p8 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
C [auth P]d1uf2p2 All beta proteins Viral protein domain Viral protein domain Top domain of virus capsid protein RDV p8, central (top) domain (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
Bd1uf2b_ Multi-domain proteins (alpha and beta) Reovirus inner layer core protein p3 Reovirus inner layer core protein p3 Phytoreovirus core RDV p3 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)
Ad1uf2a_ Multi-domain proteins (alpha and beta) Reovirus inner layer core protein p3 Reovirus inner layer core protein p3 Phytoreovirus core RDV p3 (Rice dwarf virus ) [TaxId: 10991 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
O [auth T]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
O [auth T]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
O [auth T]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
M [auth I]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
M [auth I]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
M [auth I]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
L [auth S]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
L [auth S]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
L [auth S]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
K [auth H]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
K [auth H]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
K [auth H]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
I [auth R]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
I [auth R]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
I [auth R]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
F [auth Q]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
F [auth Q]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
F [auth Q]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
D [auth C]SCOP2 FamilyPhytoreovirus capsid 8029376 4000733 SCOP2 (2022-06-29)
D [auth C]SCOP2 FamilyTop domain of rotavirus capsid protein-like 8029377 4002501 SCOP2 (2022-06-29)
D [auth C]SCOP2 SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2 (2022-06-29)
D [auth C]SCOP2 SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2 (2022-06-29)
C [auth P]SCOP2B SuperfamilyTop domain of rotavirus capsid protein-like 8041756 3002477 SCOP2B (2022-06-29)
C [auth P]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
C [auth P]SCOP2B SuperfamilyA virus capsid protein alpha-helical domain 8041755 3001154 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyReovirus inner layer core protein p3 8041754 3001935 SCOP2B (2022-06-29)
ASCOP2 FamilyPhytoreovirus core 8029375 4001662 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyReovirus inner layer core protein p3 8041754 3001935 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth T]TPK_B1_bindinge1uf2T1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
O [auth T]e1uf2T2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
N [auth J]TPK_B1_bindinge1uf2J1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
N [auth J]e1uf2J2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
M [auth I]TPK_B1_bindinge1uf2I1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
M [auth I]e1uf2I2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
L [auth S]TPK_B1_bindinge1uf2S1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
L [auth S]e1uf2S2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
K [auth H]TPK_B1_bindinge1uf2H1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
K [auth H]e1uf2H2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
J [auth G]TPK_B1_bindinge1uf2G1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
J [auth G]e1uf2G2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
I [auth R]TPK_B1_bindinge1uf2R1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
I [auth R]e1uf2R2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
H [auth F]TPK_B1_bindinge1uf2F1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
H [auth F]e1uf2F2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
G [auth E]TPK_B1_bindinge1uf2E1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
G [auth E]e1uf2E2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
F [auth Q]TPK_B1_bindinge1uf2Q1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
F [auth Q]e1uf2Q2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
E [auth D]TPK_B1_bindinge1uf2D1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
E [auth D]e1uf2D2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
D [auth C]Orbi_VP7e1uf2C1 A: beta sandwichesX: jelly-rollH: Viral protein domainT: Viral protein domainF: Orbi_VP7ECOD (v294.1)
D [auth C]Phytoreo_P8e1uf2C2 A: alpha bundlesX: A virus capsid protein alpha-helical domainH: A virus capsid protein alpha-helical domainT: A virus capsid protein alpha-helical domainF: Phytoreo_P8ECOD (v294.1)
C [auth P]TPK_B1_bindinge1uf2P1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TPK_B1_bindingECOD (v294.1)
C [auth P]e1uf2P2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF:ECOD (v294.1)
BPilNe1uf2B1 A: a/b three-layered sandwichesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: PilNECOD (v294.1)
ARDV-p3e1uf2A1 A: few secondary structure elementsX: Inner layer core protein p3-relatedH: Inner layer core protein p3-relatedT: Inner layer core protein p3-relatedF: RDV-p3ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
O [auth T]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
N [auth J]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
M [auth I]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L [auth S]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
K [auth H]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
J [auth G]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I [auth R]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
H [auth F]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
G [auth E]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
F [auth Q]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
E [auth D]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D [auth C]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C [auth P]2.60.120.170 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
P [auth K]Structural protein P7 -
Outer capsid protein P8
A, B
Core protein P3 -