1STZ | pdb_00001stz

Crystal structure of a hypothetical protein at 2.2 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d1stzc1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	Heat-inducible transcription repressor HrcA, N-terminal domain	Heat-inducible transcription repressor HrcA, N-terminal domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
C	d1stzc2	Alpha and beta proteins (a+b)	Profilin-like	GAF domain-like	HrcA C-terminal domain-like	Heat-inducible transcription repressor HrcA, C-terminal domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
B	d1stzb1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	Heat-inducible transcription repressor HrcA, N-terminal domain	Heat-inducible transcription repressor HrcA, N-terminal domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
B	d1stzb2	Alpha and beta proteins (a+b)	Profilin-like	GAF domain-like	HrcA C-terminal domain-like	Heat-inducible transcription repressor HrcA, C-terminal domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
A	d1stza1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	Heat-inducible transcription repressor HrcA, N-terminal domain	Heat-inducible transcription repressor HrcA, N-terminal domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
A	d1stza2	Alpha and beta proteins (a+b)	Profilin-like	GAF domain-like	HrcA C-terminal domain-like	Heat-inducible transcription repressor HrcA, C-terminal domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	GAF domain-like	8002834	3000080	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GAF domain-like	8002834	3000080	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Winged helix DNA-binding domain	8002831	3000034	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GAF domain-like	8002834	3000080	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Winged helix DNA-binding domain	8002831	3000034	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GAF domain-like	8002834	3000080	SCOP2B (2022-06-29)
A	SCOP2 Family	HrcA N-terminal domain-like	8002830	4000162	SCOP2 (2022-06-29)
A	SCOP2 Family	HrcA C-terminal domain-like	8002833	4000169	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Winged helix DNA-binding domain	8002831	3000034	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	GAF domain-like	8002834	3000080	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Phage_CII	e1stzC1	A: alpha bundles	X: EGF-like	H: YozE-like	T: Ribbon-helix-helix	F: Phage_CII	ECOD (develop294)
C	OsmC	e1stzC2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
C	Transpeptidase	e1stzC3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: Transpeptidase	ECOD (develop294)
B	Phage_CII	e1stzB1	A: alpha bundles	X: EGF-like	H: YozE-like	T: Ribbon-helix-helix	F: Phage_CII	ECOD (develop294)
B	OsmC	e1stzB2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: OsmC	ECOD (develop294)
B	Transpeptidase	e1stzB3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: Transpeptidase	ECOD (develop294)
A	HrcA_DNA-bdg	e1stzA1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: HrcA_DNA-bdg	ECOD (develop294)
A	HrcA	e1stzA3	A: a+b three layers	X: Profilin-like	H: sensor domains	T: sensor domains	F: HrcA	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
C	3.30.450.40	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	GAF domain	CATH (4.3.0)
C	3.30.390.60	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
B	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
B	3.30.450.40	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	GAF domain	CATH (4.3.0)
B	3.30.390.60	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
A	3.30.450.40	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	GAF domain	CATH (4.3.0)
A	3.30.390.60	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF01628	HrcA protein C terminal domain (HrcA)	HrcA protein C terminal domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Heat-inducible transcription repressor hrcA homolog	DNA binding binding nucleic acid binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR002571	Heat-inducible transcription repressor HrcA	Family
A, B, C	IPR023120	Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily	Homologous Superfamily
A, B, C	IPR029016	GAF-like domain superfamily	Homologous Superfamily
A, B, C	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B, C	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B, C	IPR021153	Heat-inducible transcription repressor HrcA, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.