1RL2
RIBOSOMAL PROTEIN L2 RNA-BINDING DOMAIN FROM BACILLUS STEAROTHERMOPHILUS
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1rl2a1 | All beta proteins | SH3-like barrel | Translation proteins SH3-like domain | C-terminal domain of ribosomal protein L2 | C-terminal domain of ribosomal protein L2 | (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
A | d1rl2a2 | All beta proteins | OB-fold | Nucleic acid-binding proteins | Cold shock DNA-binding domain-like | N-terminal domain of ribosomal protein L2 | (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
B | d1rl2b1 | All beta proteins | SH3-like barrel | Translation proteins SH3-like domain | C-terminal domain of ribosomal protein L2 | C-terminal domain of ribosomal protein L2 | (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
B | d1rl2b2 | All beta proteins | OB-fold | Nucleic acid-binding proteins | Cold shock DNA-binding domain-like | N-terminal domain of ribosomal protein L2 | (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | C-terminal domain of ribosomal protein L2 | 8029293 | 4001762 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Cold shock DNA-binding domain-like | 8029574 | 4001909 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8041672 | 3000334 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Nucleic acid-binding proteins | 8041953 | 3000135 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8041672 | 3000334 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nucleic acid-binding proteins | 8041953 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ribosomal_L2_1 | e1rl2A1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
A | Ribosomal_L2_C_2 | e1rl2A2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
B | Ribosomal_L2_1 | e1rl2B1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
B | Ribosomal_L2_C_2 | e1rl2B2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
A | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
B | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain | |
PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR022669 | Large ribosomal subunit protein uL2, C-terminal | Domain | |
IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily | |
IPR008991 | Translation protein SH3-like domain superfamily | Homologous Superfamily | |
IPR022671 | Large ribosomal subunit protein uL2, conserved site | Conserved Site | |
IPR005880 | Large ribosomal subunit protein uL2, bacterial/organellar-type | Family | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR022666 | Large ribosomal subunit protein uL2, RNA-binding domain | Domain | |
IPR014726 | Large ribosomal subunit protein uL2, domain 3 | Homologous Superfamily | |
IPR002171 | Large ribosomal subunit protein uL2 | Family |