1MJG | pdb_00001mjg

CRYSTAL STRUCTURE OF BIFUNCTIONAL CARBON MONOXIDE DEHYDROGENASE/ACETYL-COA SYNTHASE(CODH/ACS) FROM MOORELLA THERMOACETICA (F. CLOSTRIDIUM THERMOACETICUM)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F [auth N]	d1mjgn_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
G [auth O]	d1mjgo_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
H [auth P]	d1mjgp_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
E [auth M]	d1mjgm_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
D	d1mjgd_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
C	d1mjgc_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
B	d1mjgb_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
A	d1mjga_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth N]	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2B (2022-06-29)
F [auth N]	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
F [auth N]	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
F [auth N]	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2B (2022-06-29)
G [auth O]	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2B (2022-06-29)
G [auth O]	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
G [auth O]	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
G [auth O]	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2B (2022-06-29)
H [auth P]	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2B (2022-06-29)
H [auth P]	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2B (2022-06-29)
H [auth P]	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
H [auth P]	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
E [auth M]	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2B (2022-06-29)
E [auth M]	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
E [auth M]	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2B (2022-06-29)
E [auth M]	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth N]	TFR_dimer	e1mjgN1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (v294.1)
F [auth N]	CBAH	e1mjgN2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
F [auth N]	Cytochrom_CIII	e1mjgN4	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Cytochrom_CIII	ECOD (v294.1)
G [auth O]	TFR_dimer	e1mjgO1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (v294.1)
G [auth O]	CBAH	e1mjgO2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
G [auth O]	Cytochrom_CIII	e1mjgO4	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Cytochrom_CIII	ECOD (v294.1)
H [auth P]	TFR_dimer	e1mjgP1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (v294.1)
H [auth P]	CBAH	e1mjgP2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
H [auth P]	Cytochrom_CIII	e1mjgP4	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Cytochrom_CIII	ECOD (v294.1)
E [auth M]	TFR_dimer	e1mjgM1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (v294.1)
E [auth M]	CBAH	e1mjgM2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
E [auth M]	ACS_CODH_B_C	e1mjgM4	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: ACS_CODH_B_C	ECOD (v294.1)
D	TFR_dimer	e1mjgD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (v294.1)
D	ACS_CODH_B_C	e1mjgD2	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: ACS_CODH_B_C	ECOD (v294.1)
D	RecU	e1mjgD3	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)
D	RhaA	e1mjgD4	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: RhaA	ECOD (v294.1)
C	TFR_dimer	e1mjgC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (v294.1)
C	ACS_CODH_B_C	e1mjgC2	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: ACS_CODH_B_C	ECOD (v294.1)
C	RecU	e1mjgC3	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)
C	RhaA	e1mjgC4	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: RhaA	ECOD (v294.1)
B	TFR_dimer	e1mjgB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (v294.1)
B	ACS_CODH_B_C	e1mjgB2	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: ACS_CODH_B_C	ECOD (v294.1)
B	RecU	e1mjgB3	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)
B	RhaA	e1mjgB4	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: RhaA	ECOD (v294.1)
A	TFR_dimer	e1mjgA1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (v294.1)
A	ACS_CODH_B_C	e1mjgA2	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: ACS_CODH_B_C	ECOD (v294.1)
A	RecU	e1mjgA3	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)
A	RhaA	e1mjgA4	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: RhaA	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth N]	1.10.8.190	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
F [auth N]	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
F [auth N]	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
F [auth N]	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
F [auth N]	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
G [auth O]	1.10.8.190	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
G [auth O]	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
G [auth O]	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
G [auth O]	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
G [auth O]	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
H [auth P]	1.10.8.190	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
H [auth P]	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
H [auth P]	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
H [auth P]	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
H [auth P]	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
E [auth M]	1.10.8.190	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
E [auth M]	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
E [auth M]	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
E [auth M]	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
E [auth M]	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
D	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
D	1.20.1270.30	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
C	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	1.20.1270.30	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
B	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	1.20.1270.30	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
A	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	1.20.1270.30	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth M], F [auth N], G [auth O], H [auth P]	Carbon monoxide dehydrogenase alpha subunit	anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity acyltransferase activity CO-methylating acetyl-CoA synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity acyltransferase activity CO-methylating acetyl-CoA synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process carbon fixation	-
A, B, C, D	CARBON MONOXIDE DEHYDROGENASE BETA SUBUNIT	cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity, acting on the aldehyde or oxo group of donors hydroxylamine reductase activity oxidoreductase activity, acting on other nitrogenous compounds as donors iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding	metabolic process cellular process carbon fixation generation of precursor metabolites and energy response to hydrogen peroxide response to oxidative stress response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth M], F [auth N], G [auth O], H [auth P]	IPR041350	Carbon monoxide dehydrogenase subunit alpha ,N-terminal	Domain
E [auth M], F [auth N], G [auth O], H [auth P]	IPR016099	Prismane-like, alpha/beta-sandwich	Homologous Superfamily
E [auth M], F [auth N], G [auth O], H [auth P]	IPR004461	CO dehydrogenase/acetyl-CoA synthase complex beta subunit	Family
E [auth M], F [auth N], G [auth O], H [auth P]	IPR045822	CO dehydrogenase/acetyl-CoA synthase complex beta subunit , C-terminal	Domain
E [auth M], F [auth N], G [auth O], H [auth P]	IPR038571	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase, domain 3 superfamily	Homologous Superfamily
E [auth M], F [auth N], G [auth O], H [auth P]	IPR011254	Prismane-like superfamily	Homologous Superfamily
A, B, C, D	IPR016099	Prismane-like, alpha/beta-sandwich	Homologous Superfamily
A, B, C, D	IPR004137	Hydroxylamine reductase/Ni-containing CO dehydrogenase	Family
A, B, C, D	IPR016101	CO dehydrogenase, alpha-bundle	Homologous Superfamily
A, B, C, D	IPR010047	Ni-containing CO dehydrogenase	Family
A, B, C, D	IPR011254	Prismane-like superfamily	Homologous Superfamily