1M0F | pdb_00001m0f

Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
G [auth B]d1m0fb_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Bacteriophage alpha3 assembly (Escherichia phage alpha3 ) [TaxId: 10849 ], SCOPe (2.08)
F [auth G]d1m0fg_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Bacteriophage alpha3 assembly (Escherichia phage alpha3 ) [TaxId: 10849 ], SCOPe (2.08)
E [auth F]d1m0ff_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Bacteriophage alpha3 assembly (Escherichia phage alpha3 ) [TaxId: 10849 ], SCOPe (2.08)
D [auth 4]d1m0f4_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Bacteriophage alpha3 assembly (Escherichia phage alpha3 ) [TaxId: 10849 ], SCOPe (2.08)
C [auth 3]d1m0f3_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Bacteriophage alpha3 assembly (Escherichia phage alpha3 ) [TaxId: 10849 ], SCOPe (2.08)
B [auth 2]d1m0f2_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Bacteriophage alpha3 assembly (Escherichia phage alpha3 ) [TaxId: 10849 ], SCOPe (2.08)
A [auth 1]d1m0f1_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Bacteriophage alpha3 assembly (Escherichia phage alpha3 ) [TaxId: 10849 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth F]SCOP2B SuperfamilyssDNA viruses 8043143 3000931 SCOP2B (2022-06-29)
D [auth 4]SCOP2B SuperfamilyScaffolding protein gpD of bacteriophage procapsid 8032652 3000749 SCOP2B (2022-06-29)
C [auth 3]SCOP2B SuperfamilyScaffolding protein gpD of bacteriophage procapsid 8032652 3000749 SCOP2B (2022-06-29)
B [auth 2]SCOP2B SuperfamilyScaffolding protein gpD of bacteriophage procapsid 8032652 3000749 SCOP2B (2022-06-29)
A [auth 1]SCOP2B SuperfamilyScaffolding protein gpD of bacteriophage procapsid 8032652 3000749 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth B]Integrin_b_cyte1m0fB1 A: a/b three-layered sandwichesX: RuvA-CH: Integrin beta-1D cytoplasmic tailT: Integrin beta-1D cytoplasmic tailF: Integrin_b_cytECOD (v294.1)
F [auth G]Flavi_glycoprote1m0fG1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (v294.1)
E [auth F]Flavi_glycoprote1m0fF1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (v294.1)
D [auth 4]Flavi_glycoprote1m0f41 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (v294.1)
C [auth 3]Flavi_glycoprote1m0f31 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (v294.1)
B [auth 2]Flavi_glycoprote1m0f21 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (v294.1)
A [auth 1]Flavi_glycoprote1m0f11 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: Flavi_glycoprotECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth G]PF02306Major spike protein (G protein) (Phage_G)Major spike protein (G protein)This is a family of proteins from single-stranded DNA bacteriophages. Five G proteins, each a tight beta barrel, from twelve surface spikes. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage