1LMJ | pdb_00001lmj

NMR Study of the Fibrillin-1 cbEGF12-13 Pair of Ca2+ Binding Epidermal Growth Factor-like Domains

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1lmja1	Small proteins	Knottins (small inhibitors, toxins, lectins)	EGF/Laminin	EGF-type module	Fibrillin-1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FXa_inhibition	e1lmjA2	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: FXa_inhibition	ECOD (v294.1)
A	FXa_inhibition	e1lmjA4	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: PreATP-grasp domain	F: FXa_inhibition	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07645	Calcium-binding EGF domain (EGF_CA)	Calcium-binding EGF domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	fibrillin 1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding structural molecule activity extracellular matrix structural constituent extracellular matrix constituent conferring elasticity structural molecule activity conferring elasticity cell adhesion molecule binding protein-containing complex binding protein binding integrin binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding structural molecule activity extracellular matrix structural constituent extracellular matrix constituent conferring elasticity structural molecule activity conferring elasticity cell adhesion molecule binding protein-containing complex binding protein binding integrin binding signaling receptor binding hormone activity molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding identical protein binding	cellular response to stimulus cellular response to nitrogen compound response to stimulus response to endogenous stimulus response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to stimulus cellular response to nitrogen compound response to stimulus response to endogenous stimulus response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to insulin-like growth factor stimulus cellular response to hormone stimulus developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development cellular response to growth factor stimulus response to transforming growth factor beta cellular response to transforming growth factor beta stimulus response to growth factor sensory organ development eye development visual system development camera-type eye development sensory system development skeletal system development regulation of leukocyte differentiation regulation of cellular process negative regulation of biological process regulation of cell differentiation regulation of cell development cell differentiation regulation of immune system process negative regulation of hemopoiesis regulation of osteoclast development regulation of biological process negative regulation of leukocyte differentiation regulation of myeloid leukocyte differentiation negative regulation of myeloid cell differentiation negative regulation of myeloid leukocyte differentiation osteoclast development negative regulation of multicellular organismal process leukocyte differentiation myeloid leukocyte differentiation cellular developmental process regulation of developmental process cell development regulation of osteoclast differentiation bone cell development osteoclast differentiation negative regulation of cellular process regulation of multicellular organismal process negative regulation of cell differentiation bone development regulation of multicellular organismal development hemopoiesis regulation of myeloid cell differentiation negative regulation of developmental process biological regulation negative regulation of osteoclast differentiation negative regulation of cell development negative regulation of osteoclast development myeloid cell differentiation negative regulation of immune system process immune system process myeloid cell development regulation of hemopoiesis cell adhesion cell adhesion mediated by integrin post-embryonic eye morphogenesis eye morphogenesis anatomical structure morphogenesis sensory organ morphogenesis animal organ morphogenesis monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process small molecule metabolic process metabolic process primary metabolic process glucose metabolic process biosynthetic process macromolecule metabolic process gene expression macromolecule biosynthetic process metanephros development kidney development renal system development embryonic organ morphogenesis embryonic eye morphogenesis embryonic morphogenesis embryo development embryonic organ development chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis tube development respiratory tube development lung development respiratory system development lung alveolus development	basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure solid phase of interstitial matrix elastic fiber microfibril supramolecular fiber supramolecular polymer supramolecular complex interstitial matrix non-collagenous component of interstitial matrix membrane-bounded organelle basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure solid phase of interstitial matrix elastic fiber microfibril supramolecular fiber supramolecular polymer supramolecular complex interstitial matrix non-collagenous component of interstitial matrix membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR024731	NELL2-like, EGF domain	Domain
A	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
A	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
A	IPR026823	Complement Clr-like EGF domain	Domain
A	IPR013032	EGF-like, conserved site	Conserved Site
A	IPR000742	EGF-like domain	Domain
A	IPR052080	von Willebrand factor C/EGF & Fibrillin	Family
A	IPR036773	TGF-beta binding (TB) domain superfamily	Homologous Superfamily
A	IPR049388	Fibrillin, first EGF domain	Domain
A	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
A	IPR001881	EGF-like calcium-binding domain	Domain
A	IPR017878	TB domain	Domain
A	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM
A	IPR040872	Fibrillin 1, unique N-terminal domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P35555	Marfan syndrome Weill-Marchesani syndrome thoracic aortic aneurysm acromicric dysplasia MASS syndrome stiff skin syndrome aortic aneurysm isolated ectopia lentis ectopia lentis 1, isolated, autosomal dominant Geleophysic dysplasia 2 geleophysic dysplasia progeroid and marfanoid aspect-lipodystrophy syndrome hyperinsulinism Ehlers-Danlos syndrome endometriosis Marfan syndrome Weill-Marchesani syndrome thoracic aortic aneurysm acromicric dysplasia MASS syndrome stiff skin syndrome aortic aneurysm isolated ectopia lentis ectopia lentis 1, isolated, autosomal dominant Geleophysic dysplasia 2 geleophysic dysplasia progeroid and marfanoid aspect-lipodystrophy syndrome hyperinsulinism Ehlers-Danlos syndrome endometriosis Shprintzen-Goldberg syndrome hyperglycemia cirrhosis of liver Liver Cirrhosis, Experimental glaucoma-ectopia-microspherophakia-stiff joints-short stature syndrome craniosynostosis Loeys-Dietz syndrome ductal breast carcinoma in situ malignant mesothelioma neonatal Marfan syndrome abdominal aortic aneurysm facioscapulohumeral muscular dystrophy ovarian cancer adenoma pilocytic astrocytoma psoriasis atopic eczema glioblastoma ulcerative colitis brain aneurysm cerebrovascular disorder invasive ductal breast carcinoma limb-girdle muscular dystrophy diabetes mellitus lung carcinoma malignant pancreatic neoplasm medulloblastoma osteogenesis imperfecta pancreatic ductal adenocarcinoma gastric carcinoma pituitary cancer subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor breast cancer intellectual disability congenital contractural arachnodactyly Duchenne muscular dystrophy malignant ependymoma nasopharyngeal carcinoma osteosarcoma acute myeloid leukemia familial thoracic aortic aneurysm and aortic dissection pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Sjogren syndrome Becker muscular dystrophy cataract interstitial cystitis juvenile dermatomyositis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.