STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth A] | d1foka1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Restriction endonuclease FokI, N-terminal (recognition) domain | Restriction endonuclease FokI, N-terminal (recognition) domain | (Planomicrobium okeanokoites ) [TaxId: 244 ], | SCOPe (2.08) |
| C [auth A] | d1foka4 | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | Restriction endonuclease FokI, C-terminal (catalytic) domain | Restriction endonuclease FokI, C-terminal (catalytic) domain | (Planomicrobium okeanokoites ) [TaxId: 244 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth A] | SCOP2B Superfamily | Restriction endonuclease-like | 8002914 | 3000104 | SCOP2B (2022-06-29) |
| C [auth A] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002918 | 3000034 | SCOP2B (2022-06-29) |
| C [auth A] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002920 | 3000034 | SCOP2B (2022-06-29) |
| C [auth A] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002916 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth A] | FokI_C | e1fokA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: FokI_C | ECOD (1.6) |
| C [auth A] | FokI_N | e1fokA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: FokI_N | ECOD (1.6) |
| C [auth A] | Type2_restr_D3 | e1fokA3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Type2_restr_D3 | ECOD (1.6) |
| C [auth A] | Endonuc-FokI_C | e1fokA4 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Endonuc-FokI_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C [auth A] | 3.90.241.10 | Alpha Beta | Alpha-Beta Complex | FokI Restriction Endonuclease | Chain A, domain 1 | CATH (4.3.0) |
| C [auth A] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
| C [auth A] | 3.40.91.30 | Alpha Beta | 3-Layer(aba) Sandwich | Restriction Endonuclease | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth A] | IPR004234 | FokI, recognition domain, subdomain 1 | Domain |
| C [auth A] | IPR015334 | FokI, cleavage domain | Domain |
| C [auth A] | IPR011335 | Restriction endonuclease type II-like | Homologous Superfamily |
| C [auth A] | IPR004233 | FokI, recognition domain, subdomain 2 | Domain |
| C [auth A] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
| C [auth A] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
| C [auth A] | IPR031655 | FokI, D3 domain | Domain |
| C [auth A] | IPR044945 | FokI, recognition domain, subdomain 1 and 2 | Homologous Superfamily |














