1DWL | pdb_00001dwl

The Ferredoxin-Cytochrome complex using heteronuclear NMR and docking simulation

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1dwla_	Low resolution protein structures	Electron transport chains	Electron transport chains	Electron transport chains	Ferredoxin-cytochrome complex	(Desulfomicrobium norvegicum ) [TaxId: 52561 ],	SCOPe (2.08)
B	d1dwlb_	Low resolution protein structures	Electron transport chains	Electron transport chains	Electron transport chains	Ferredoxin-cytochrome complex	(Nitratidesulfovibrio vulgaris str. Hildenborough ) [TaxId: 882 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Single 4Fe-4S cluster ferredoxin	8068726	4001234	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	4Fe-4S ferredoxins	8068727	3000020	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Cytochrome c	8036386	3000815	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PTN_MK_N	e1dwlA1	A: a/b three-layered sandwiches	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain	T: 40S ribosomal protein S3A N-terminal domain	F: PTN_MK_N	ECOD (v294.1)
B	PTN_MK_N	e1dwlB1	A: a/b three-layered sandwiches	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain	T: 40S ribosomal protein S3A N-terminal domain	F: PTN_MK_N	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF00034	Cytochrome c (Cytochrom_C)	Cytochrome c	The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	FERREDOXIN I	iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding	-	-
B	CYTOCHROME C553	binding tetrapyrrole binding heme binding electron transfer activity cation binding ion binding metal ion binding small molecule binding	-	cellular anatomical structure extracellular region periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
A	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
A	IPR001080	3Fe-4S ferredoxin	Family
A	IPR051269	Iron-sulfur cluster electron transport	Family
B	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
B	IPR009056	Cytochrome c-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.