1DGR | pdb_00001dgr

Refined crystal structure of canavalin from jack bean

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth Y]	d1dgr.1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Canavalia ensiformis ) [TaxId: 3823 ],	SCOPe (2.08)
F [auth W]	d1dgr.2	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Canavalia ensiformis ) [TaxId: 3823 ],	SCOPe (2.08)
I [auth M]	d1dgr.4	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Canavalia ensiformis ) [TaxId: 3823 ],	SCOPe (2.08)
B [auth X]	d1dgr.1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Canavalia ensiformis ) [TaxId: 3823 ],	SCOPe (2.08)
E [auth V]	d1dgr.2	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Canavalia ensiformis ) [TaxId: 3823 ],	SCOPe (2.08)
H [auth N]	d1dgr.4	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Canavalia ensiformis ) [TaxId: 3823 ],	SCOPe (2.08)
A	d1dgra_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Canavalia ensiformis ) [TaxId: 3823 ],	SCOPe (2.08)
D [auth B]	d1dgrb_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Canavalia ensiformis ) [TaxId: 3823 ],	SCOPe (2.08)
G [auth C]	d1dgrc_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Germin/Seed storage 7S protein	Seed storage 7S protein	(Canavalia ensiformis ) [TaxId: 3823 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RmlC-like cupins	8043031	3001825	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	RmlC-like cupins	8043031	3001825	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	RmlC-like cupins	8043031	3001825	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cupin_1	e1dgrA1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_1	ECOD (1.6)
D [auth B]	Cupin_1	e1dgrB1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_1	ECOD (1.6)
G [auth C]	Cupin_1	e1dgrC1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth Y]	1.10.10.840	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
F [auth W]	1.10.10.840	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
I [auth M]	1.10.10.840	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
B [auth X]	2.60.120.1450	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E [auth V]	2.60.120.1450	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
H [auth N]	2.60.120.1450	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
D [auth B]	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
G [auth C]	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth Y], F [auth W], I [auth M]	CANAVALIN	nutrient reservoir activity identical protein binding protein binding binding	-	protein-containing complex
B [auth X], E [auth V], H [auth N]	CANAVALIN	nutrient reservoir activity identical protein binding protein binding binding	-	protein-containing complex
A, D [auth B], G [auth C]	CANAVALIN	nutrient reservoir activity identical protein binding protein binding binding	-	protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth Y], F [auth W], I [auth M]	IPR006045	Cupin 1	Domain
C [auth Y], F [auth W], I [auth M]	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
C [auth Y], F [auth W], I [auth M]	IPR050253	Seed Storage and Functional Proteins	Family
C [auth Y], F [auth W], I [auth M]	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily
B [auth X], E [auth V], H [auth N]	IPR006045	Cupin 1	Domain
B [auth X], E [auth V], H [auth N]	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
B [auth X], E [auth V], H [auth N]	IPR050253	Seed Storage and Functional Proteins	Family
B [auth X], E [auth V], H [auth N]	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily
A, D [auth B], G [auth C]	IPR006045	Cupin 1	Domain
A, D [auth B], G [auth C]	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A, D [auth B], G [auth C]	IPR050253	Seed Storage and Functional Proteins	Family
A, D [auth B], G [auth C]	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.