1DGR
Refined crystal structure of canavalin from jack bean
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RmlC-like cupins | 8043031 | 3001825 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | RmlC-like cupins | 8043031 | 3001825 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | RmlC-like cupins | 8043031 | 3001825 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cupin_1 | e1dgrA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: Cupin_1 | ECOD (1.6) |
D [auth B] | Cupin_1 | e1dgrB1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: Cupin_1 | ECOD (1.6) |
G [auth C] | Cupin_1 | e1dgrC1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: Cupin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
D [auth B] | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
G [auth C] | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
B [auth X] | 2.60.120.1450 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
E [auth V] | 2.60.120.1450 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
H [auth N] | 2.60.120.1450 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C [auth Y] | 1.10.10.840 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
F [auth W] | 1.10.10.840 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
I [auth M] | 1.10.10.840 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B], G [auth C] | PF00190 | Cupin (Cupin_1) | Cupin | This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major ... | Domain |
B [auth X], E [auth V], H [auth N] | PF00190 | Cupin (Cupin_1) | Cupin | This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major ... | Domain |
C [auth Y], F [auth W], I [auth M] | PF00190 | Cupin (Cupin_1) | Cupin | This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, D [auth B], G [auth C] | CANAVALIN | - | ||
B [auth X], E [auth V], H [auth N] | CANAVALIN | - | ||
C [auth Y], F [auth W], I [auth M] | CANAVALIN | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B], G [auth C] | IPR006045 | Cupin 1 | Domain |
A, D [auth B], G [auth C] | IPR011051 | RmlC-like cupin domain superfamily | Homologous Superfamily |
A, D [auth B], G [auth C] | IPR050253 | Seed Storage and Functional Proteins | Family |
A, D [auth B], G [auth C] | IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily |
B [auth X], E [auth V], H [auth N] | IPR006045 | Cupin 1 | Domain |
B [auth X], E [auth V], H [auth N] | IPR011051 | RmlC-like cupin domain superfamily | Homologous Superfamily |
B [auth X], E [auth V], H [auth N] | IPR050253 | Seed Storage and Functional Proteins | Family |
B [auth X], E [auth V], H [auth N] | IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily |
C [auth Y], F [auth W], I [auth M] | IPR006045 | Cupin 1 | Domain |
C [auth Y], F [auth W], I [auth M] | IPR011051 | RmlC-like cupin domain superfamily | Homologous Superfamily |
C [auth Y], F [auth W], I [auth M] | IPR050253 | Seed Storage and Functional Proteins | Family |
C [auth Y], F [auth W], I [auth M] | IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily |