NUCLEOTIDE SEQUENCE AND X-RAY STRUCTURE OF CYCLODEXTRIN GLYCOSYLTRANSFERASE FROM BACILLUS CIRCULANS STRAIN 251 IN A MALTOSE-DEPENDENT CRYSTAL FORM
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1cdga1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | E-set domains of sugar-utilizing enzymes | Cyclomaltodextrin glycanotransferase, domain D | (Niallia circulans ) [TaxId: 1397 ], | SCOPe (2.08) |
| A | d1cdga2 | All beta proteins | Prealbumin-like | Starch-binding domain-like | Starch-binding domain | Cyclodextrin glycosyltransferase, C-terminal domain | (Niallia circulans ) [TaxId: 1397 ], | SCOPe (2.08) |
| A | d1cdga3 | All beta proteins | Glycosyl hydrolase domain | Glycosyl hydrolase domain | alpha-Amylases, C-terminal beta-sheet domain | Cyclodextrin glycosyltransferase | (Niallia circulans ) [TaxId: 1397 ], | SCOPe (2.08) |
| A | d1cdga4 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | Amylase, catalytic domain | Cyclodextrin glycosyltransferase | (Niallia circulans ) [TaxId: 1397 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | E set domains | 8054905 | 3000070 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Starch-binding domain-like | 8040267 | 3000816 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8042883 | 3001528 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | (Trans)glycosidases | 8043311 | 3000313 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | TIG_2 | e1cdgA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: TIG_2 | ECOD (1.6) |
| A | CBM_20 | e1cdgA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: CBM_20 | ECOD (1.6) |
| A | Alpha-amylase_C | e1cdgA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Alpha-amylase_C | ECOD (1.6) |
| A | Alpha-amylase | e1cdgA4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
| A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR013784 | Carbohydrate-binding-like fold | Homologous Superfamily | |
| IPR031319 | Alpha-amylase, C-terminal domain | Domain | |
| IPR002909 | IPT domain | Domain | |
| IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
| IPR002044 | Carbohydrate binding module family 20 | Domain | |
| IPR006048 | Alpha-amylase/branching enzyme, C-terminal all beta | Domain | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
| IPR006047 | Glycosyl hydrolase family 13, catalytic domain | Domain | |
| IPR006046 | Alpha amylase | Family | |
| IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| cyclomaltodextrin glucanotransferase M-CSA #45 | Cyclodextrin glycosyltransferases (CGTases) are industrially important enzymes that produce cyclodextrins from starch by intramolecular transglycosylation. They belong to the important alpha-amylase family (family 13) of glycosyl hydrolases and catalyse the cyclisation of part of a (1->4)-alpha-D-glucan chain by the formation of a (1->4)-alpha-D-glucosidic bond. This enzyme also acts as a hydrolase or a transglycosylase, depending on the identity of the acceptor molecule in the final stages of the reaction. | Defined by 5 residues: ARG:A-227ASP:A-229GLU:A-257HIS:A-327ASP:A-328 | EC: 2.4.1.19 (PDB Primary Data) |














