1ZVO
Semi-extended solution structure of human myeloma immunoglobulin D determined by constrained X-ray scattering
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1zvoa1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | Immunoglobulin light chain lambda variable domain, VL-lambda | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1zvoa2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | Immunoglobulin light chain lambda constant domain, CL-lambda | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1zvob1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | Immunoglobulin light chain lambda variable domain, VL-lambda | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1zvob2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | Immunoglobulin light chain lambda constant domain, CL-lambda | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | C1-set | e1zvoA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
A | V-set_3 | e1zvoA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
B | C1-set | e1zvoB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
B | V-set_3 | e1zvoB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
C | C1-set | e1zvoC4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
C | C1-set_1 | e1zvoC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C | V-set_12 | e1zvoC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
C | EUF08782 | e1zvoC3 | A: extended segments | X: Myeloma immunoglobulin D delta linker region (From Topology) | H: Myeloma immunoglobulin D delta linker region (From Topology) | T: Myeloma immunoglobulin D delta linker region | F: EUF08782 | ECOD (1.6) |
D | C1-set | e1zvoD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
D | C1-set_1 | e1zvoD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
D | V-set_12 | e1zvoD4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D | EUF08782 | e1zvoD5 | A: extended segments | X: Myeloma immunoglobulin D delta linker region (From Topology) | H: Myeloma immunoglobulin D delta linker region (From Topology) | T: Myeloma immunoglobulin D delta linker region | F: EUF08782 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
WAH (human myeloma IgD) IGLC2 G1.5>S | L-LAMBDA | Homo sapiens (human) | IGLV1-47*01, IGLV1-47*02, IGLJ3*02, IGLC2*01, IGLC2*02, IGLC3*04 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | IG-DELTA_LAMBDA | IMGT (202436-0) | |
WAH (human myeloma IgD) IGLC2 G1.5>S | H-DELTA | Homo sapiens (human) | IGHV4-39*01, IGHV4-39*06, IGHV4-39*07, IGHJ6*01, IGHJ6*02, IGHD*01, IGHD*02 | V-DOMAIN VH, C-DOMAIN CH1, C-DOMAIN CH2, C-DOMAIN CH3 | IG | IG-DELTA_LAMBDA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Light Chain | IGLV1 | Lambda | - | SAbDab (2024-09-13) | |
Heavy Chain | IGHV4 | - | - | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain | |
PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain | |
PF20838 | Immunoglobulin D, delta linker region (IgD_del_linker) | Immunoglobulin D, delta linker region | The linker region of Immunoglobulin D (IgD), the longest hinge sequence of any immunoglobulin, connects the Fab and Fc fragments. It has up to seven O-linked oligosaccharide sites, which is thought to be related to the flexible T-shape of IgD [1]. | Domain | |
PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain | |
PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain | |
PF00047 | Immunoglobulin domain (ig) | Immunoglobulin domain | Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-prot ... | Domain |