1ZNP | pdb_00001znp

X-Ray Crystal Structure of Protein Q8U9W0 from Agrobacterium tumefaciens. Northeast Structural Genomics Consortium Target AtR55.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
G	d1znpg_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	Hypothetical protein Atu3615	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
F	d1znpf_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	Hypothetical protein Atu3615	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
E	d1znpe_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	Hypothetical protein Atu3615	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
D	d1znpd_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	Hypothetical protein Atu3615	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
C	d1znpc_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	Hypothetical protein Atu3615	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
B	d1znpb_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	Hypothetical protein Atu3615	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
A	d1znpa1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	Hypothetical protein Atu3615	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	RmlC-like cupins	8036042	3001825	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RmlC-like cupins	8036042	3001825	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RmlC-like cupins	8036042	3001825	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RmlC-like cupins	8036042	3001825	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RmlC-like cupins	8036042	3001825	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RmlC-like cupins	8036042	3001825	SCOP2B (2022-06-29)
A	SCOP2 Family	YML079-like	8023662	4003244	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RmlC-like cupins	8036042	3001825	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G		e1znpG1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
F		e1znpF1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
E		e1znpE1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
D		e1znpD1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
C		e1znpC1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
B		e1znpB1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Copper-bind	F:	ECOD (20:10:01)
A		e1znpA1	A: jelly-roll	X: Double-stranded beta-helix	H: Double-stranded beta-helix	T: Cupin_1	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
F	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
E	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
D	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
C	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
B	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF06172	Cupin superfamily (DUF985) (Cupin_5)	Cupin superfamily (DUF985)	Family of uncharacterised proteins found in bacteria and eukaryotes that belongs to the Cupin superfamily.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR009327	Cupin domain of unknown function DUF985	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR039935	Uncharacterized protein YML079W-like	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.