1ZHQ | pdb_00001zhq

Crystal structure of apo MVL

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d1zhqh1	Alpha and beta proteins (a+b)	Dodecin subunit-like	Oligosaccharide binding protein	Oligomannose binding protein MVL-like	Mannan-binding lectin MVL	(Microcystis viridis ) [TaxId: 44822 ],	SCOPe (2.08)
G	d1zhqg1	Alpha and beta proteins (a+b)	Dodecin subunit-like	Oligosaccharide binding protein	Oligomannose binding protein MVL-like	Mannan-binding lectin MVL	(Microcystis viridis ) [TaxId: 44822 ],	SCOPe (2.08)
F	d1zhqf1	Alpha and beta proteins (a+b)	Dodecin subunit-like	Oligosaccharide binding protein	Oligomannose binding protein MVL-like	Mannan-binding lectin MVL	(Microcystis viridis ) [TaxId: 44822 ],	SCOPe (2.08)
E	d1zhqe1	Alpha and beta proteins (a+b)	Dodecin subunit-like	Oligosaccharide binding protein	Oligomannose binding protein MVL-like	Mannan-binding lectin MVL	(Microcystis viridis ) [TaxId: 44822 ],	SCOPe (2.08)
D	d1zhqd1	Alpha and beta proteins (a+b)	Dodecin subunit-like	Oligosaccharide binding protein	Oligomannose binding protein MVL-like	Mannan-binding lectin MVL	(Microcystis viridis ) [TaxId: 44822 ],	SCOPe (2.08)
C	d1zhqc1	Alpha and beta proteins (a+b)	Dodecin subunit-like	Oligosaccharide binding protein	Oligomannose binding protein MVL-like	Mannan-binding lectin MVL	(Microcystis viridis ) [TaxId: 44822 ],	SCOPe (2.08)
B	d1zhqb1	Alpha and beta proteins (a+b)	Dodecin subunit-like	Oligosaccharide binding protein	Oligomannose binding protein MVL-like	Mannan-binding lectin MVL	(Microcystis viridis ) [TaxId: 44822 ],	SCOPe (2.08)
A	d1zhqa1	Alpha and beta proteins (a+b)	Dodecin subunit-like	Oligosaccharide binding protein	Oligomannose binding protein MVL-like	Mannan-binding lectin MVL	(Microcystis viridis ) [TaxId: 44822 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Mannan-binding domain-like	8106650	3002859	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Mannan-binding domain-like	8106649	3002859	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Mannan-binding domain-like	8106650	3002859	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Mannan-binding domain-like	8106649	3002859	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Mannan-binding domain-like	8106650	3002859	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Mannan-binding domain-like	8106649	3002859	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Mannan-binding domain-like	8106650	3002859	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Mannan-binding domain-like	8106649	3002859	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Mannan-binding domain-like	8106650	3002859	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Mannan-binding domain-like	8106649	3002859	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Mannan-binding domain-like	8106650	3002859	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Mannan-binding domain-like	8106649	3002859	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Mannan-binding domain-like	8106649	3002859	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Mannan-binding domain-like	8106650	3002859	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Mannan-binding domain-like	8106650	3002859	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Mannan-binding domain-like	8106649	3002859	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	MVL	e1zhqH2	A: a+b two layers	X: Dodecin subunit-like	H: mannan-binding lectin MVL (From Topology)	T: mannan-binding lectin MVL	F: MVL	ECOD (1.6)
G	MVL	e1zhqG2	A: a+b two layers	X: Dodecin subunit-like	H: mannan-binding lectin MVL (From Topology)	T: mannan-binding lectin MVL	F: MVL	ECOD (1.6)
F	MVL	e1zhqF2	A: a+b two layers	X: Dodecin subunit-like	H: mannan-binding lectin MVL (From Topology)	T: mannan-binding lectin MVL	F: MVL	ECOD (1.6)
E	MVL	e1zhqE2	A: a+b two layers	X: Dodecin subunit-like	H: mannan-binding lectin MVL (From Topology)	T: mannan-binding lectin MVL	F: MVL	ECOD (1.6)
D	MVL	e1zhqD2	A: a+b two layers	X: Dodecin subunit-like	H: mannan-binding lectin MVL (From Topology)	T: mannan-binding lectin MVL	F: MVL	ECOD (1.6)
C	MVL	e1zhqC2	A: a+b two layers	X: Dodecin subunit-like	H: mannan-binding lectin MVL (From Topology)	T: mannan-binding lectin MVL	F: MVL	ECOD (1.6)
B	MVL	e1zhqB2	A: a+b two layers	X: Dodecin subunit-like	H: mannan-binding lectin MVL (From Topology)	T: mannan-binding lectin MVL	F: MVL	ECOD (1.6)
A	MVL	e1zhqA1	A: a+b two layers	X: Dodecin subunit-like	H: mannan-binding lectin MVL (From Topology)	T: mannan-binding lectin MVL	F: MVL	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.30.1490.230	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
G	3.30.1490.230	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
F	3.30.1490.230	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
E	3.30.1490.230	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
D	3.30.1490.230	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
C	3.30.1490.230	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
B	3.30.1490.230	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
A	3.30.1490.230	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF12151	Mannan-binding protein (MVL)	Mannan-binding protein	This domain family is found in bacteria, and is approximately 40 amino acids in length, There is a single completely conserved residue G that may be functionally important. The domain occurs in two types of proteins. In mannan binding proteins [1], i ...	This domain family is found in bacteria, and is approximately 40 amino acids in length, There is a single completely conserved residue G that may be functionally important. The domain occurs in two types of proteins. In mannan binding proteins [1], it forms a homodimeric molecule which complexes into a homo-octamer. In thiamidases it occurs without repeats but in the presence of other domains. MVL is distinct amongst other oligomannoside binding proteins in that it exhibits specificity for certain tetrasaccharides. Each molecule of MVL has four distinct carbohydrate binding sites.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	mannan-binding lectin	binding carbohydrate binding hydrolase activity, acting on glycosyl bonds hydrolase activity catalytic activity	regulation of defense response regulation of response to biotic stimulus regulation of biological process biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus defense response response to other organism biological regulation response to external stimulus response to biotic stimulus regulation of defense response to virus defense response to virus regulation of response to stimulus response to stress regulation of defense response regulation of response to biotic stimulus regulation of biological process biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus defense response response to other organism biological regulation response to external stimulus response to biotic stimulus regulation of defense response to virus defense response to virus regulation of response to stimulus response to stress regulation of response to stress response to external biotic stimulus response to virus	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR053754	Oligomannose-binding and Chitinase-activity Domain-containing Protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR021992	Mannan-binding protein	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.