1Z9K
Photosynthetic Reaction Center from Rhodobacter sphaeroides
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1z9ka1 | Membrane and cell surface proteins and peptides | Bacterial photosystem II reaction centre, L and M subunits | Bacterial photosystem II reaction centre, L and M subunits | Bacterial photosystem II reaction centre, L and M subunits | L (light) subunit | (Cereibacter sphaeroides ) [TaxId: 1063 ], | SCOPe (2.08) |
B | d1z9kb1 | Membrane and cell surface proteins and peptides | Bacterial photosystem II reaction centre, L and M subunits | Bacterial photosystem II reaction centre, L and M subunits | Bacterial photosystem II reaction centre, L and M subunits | M (medium) subunit | (Cereibacter sphaeroides ) [TaxId: 1063 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8034635 | 3000736 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8034636 | 3000736 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PRC-barrel domain | 8041120 | 3000637 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Photosystem II reaction centre subunit H, transmembrane region | 8041121 | 3000750 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Photo_RC | e1z9kA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
B | Photo_RC | e1z9kB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
C | PRCH_C | e1z9kC1 | A: beta barrels | X: SH3 | H: PRC-barrel domain (From Topology) | T: PRC-barrel domain | F: PRCH_C | ECOD (1.6) |
C | PRCH_N | e1z9kC2 | A: extended segments | X: Photosystem II reaction centre subunit H, transmembrane region (From Topology) | H: Photosystem II reaction centre subunit H, transmembrane region (From Topology) | T: Photosystem II reaction centre subunit H, transmembrane region | F: PRCH_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family | |
PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family | |
PF05239 | PRC-barrel domain (PRC) | PRC-barrel domain | The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036854 | Photosystem II protein D1/D2 superfamily | Homologous Superfamily | |
IPR000484 | Photosynthetic reaction centre, L/M | Family | |
IPR005871 | Photosynthetic reaction centre, L subunit | Family | |
IPR036854 | Photosystem II protein D1/D2 superfamily | Homologous Superfamily | |
IPR005781 | Photosynthetic reaction centre, M subunit | Family | |
IPR000484 | Photosynthetic reaction centre, L/M | Family | |
IPR014747 | Bacterial photosynthetic reaction centre, H-chain, C-terminal | Homologous Superfamily | |
IPR015810 | Photosynthetic reaction centre, H subunit, N-terminal | Domain | |
IPR005652 | Photosynthetic reaction centre, H subunit | Family | |
IPR037097 | Photosynthetic reaction centre, H subunit, N-terminal domain superfamily | Homologous Superfamily | |
IPR011033 | PRC-barrel-like superfamily | Homologous Superfamily | |
IPR027275 | PRC-barrel domain | Domain |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |