Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | RNA_pol_Rpb1_2 | e1z2zB1 | A: alpha bundles | X: Inserted helical domain in fatty acid synthase subunit beta | H: Voltage-gated ion channels | T: Voltage-gated ion channels | F: RNA_pol_Rpb1_2 | ECOD (develop294) |
| A | Intein_splicing | e1z2zA1 | A: alpha bundles | X: Hedgehog/intein | H: Hedgehog/intein | T: Hint | F: Intein_splicing | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.30.2350.20 | Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | TruD, catalytic domain | CATH (4.3.0) |
| B | 3.30.70.3160 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
| B | 1.10.1510.30 | Mainly Alpha | Orthogonal Bundle | Hypothetical Protein Yqey | Chain: A | CATH (4.3.0) |
| A | 3.30.2350.20 | Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | TruD, catalytic domain | CATH (4.3.0) |
| A | 3.30.70.3160 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
| A | 1.10.1510.30 | Mainly Alpha | Orthogonal Bundle | Hypothetical Protein Yqey | Chain: A | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily | Homologous Superfamily | |
| IPR042214 | Pseudouridine synthase, TruD, catalytic domain | Homologous Superfamily | |
| IPR001656 | Pseudouridine synthase, TruD | Family | |
| IPR020119 | Pseudouridine synthase TruD, conserved site | Conserved Site | |
| IPR011760 | Pseudouridine synthase, TruD, insertion domain | Domain |














