1YUD | pdb_00001yud

X-ray Crystal Structure of Protein SO0799 from Shewanella oneidensis. Northeast Structural Genomics Consortium Target SoR12.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d1yudj_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	automated matches	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
I	d1yudi_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	automated matches	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
H	d1yudh_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	automated matches	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
G	d1yudg_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	automated matches	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
F	d1yudf_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	automated matches	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
E	d1yude_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	automated matches	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
D	d1yudd_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	automated matches	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
C	d1yudc_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	automated matches	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
B	d1yudb_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	automated matches	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
A	d1yuda1	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YML079-like	Hypothetical protein SO0799	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	RmlC-like cupins	8034901	3001825	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RmlC-like cupins	8034901	3001825	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RmlC-like cupins	8034901	3001825	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RmlC-like cupins	8034901	3001825	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RmlC-like cupins	8034901	3001825	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RmlC-like cupins	8034901	3001825	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RmlC-like cupins	8034901	3001825	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RmlC-like cupins	8034901	3001825	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RmlC-like cupins	8034901	3001825	SCOP2B (2022-06-29)
A	SCOP2 Family	YML079-like	8022521	4003244	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RmlC-like cupins	8034901	3001825	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Cupin_5	e1yudJ1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)
I	Cupin_5	e1yudI1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)
H	Cupin_5	e1yudH1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)
G	Cupin_5	e1yudG1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)
F	Cupin_5	e1yudF1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)
E	Cupin_5	e1yudE1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)
D	Cupin_5	e1yudD1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)
C	Cupin_5	e1yudC1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)
B	Cupin_5	e1yudB1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)
A	Cupin_5	e1yudA1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: Cupin_5	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
I	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
H	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
G	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
F	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
E	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
D	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
C	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
B	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF06172	Cupin superfamily (DUF985) (Cupin_5)	Cupin superfamily (DUF985)	Family of uncharacterised proteins found in bacteria and eukaryotes that belongs to the Cupin superfamily.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR009327	Cupin domain of unknown function DUF985	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR039935	Uncharacterized protein YML079W-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.