1YOX | pdb_00001yox

Structure of the conserved Protein of Unknown Function PA3696 from Pseudomonas aeruginosa

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1yoxf_	All beta proteins	Double-stranded beta-helix	TRAP-like	PA3696/SPS0176-like	Hypothetical protein PA3696	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
E	d1yoxe2	All beta proteins	Double-stranded beta-helix	TRAP-like	PA3696/SPS0176-like	Hypothetical protein PA3696	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
E	d1yoxe3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
D	d1yoxd2	All beta proteins	Double-stranded beta-helix	TRAP-like	PA3696/SPS0176-like	Hypothetical protein PA3696	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
D	d1yoxd3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
C	d1yoxc_	All beta proteins	Double-stranded beta-helix	TRAP-like	PA3696/SPS0176-like	Hypothetical protein PA3696	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
B	d1yoxb2	All beta proteins	Double-stranded beta-helix	TRAP-like	PA3696/SPS0176-like	Hypothetical protein PA3696	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
B	d1yoxb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d1yoxa1	All beta proteins	Double-stranded beta-helix	TRAP-like	PA3696/SPS0176-like	Hypothetical protein PA3696	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	TRAP-like	8034813	3001865	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TRAP-like	8034813	3001865	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TRAP-like	8034813	3001865	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TRAP-like	8034813	3001865	SCOP2B (2022-06-29)
A	SCOP2 Family	PA3696/SPS0176-like	8022433	4000973	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TRAP-like	8034813	3001865	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Copper-bind	e1yoxF1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
E	DUF3228	e1yoxE2	A: a/b three-layered sandwiches	X: POZ domain	H: POZ domain	T: POZ domain	F: DUF3228	ECOD (v294.1)
D	Copper-bind	e1yoxD1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
C	Copper-bind	e1yoxC1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
B	Copper-bind	e1yoxB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
A	AIM24	e1yoxA1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: AIM24	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.60.160.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Mitochondrial biogenesis AIM24	CATH (4.3.0)
E	3.60.160.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Mitochondrial biogenesis AIM24	CATH (4.3.0)
D	3.60.160.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Mitochondrial biogenesis AIM24	CATH (4.3.0)
C	3.60.160.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Mitochondrial biogenesis AIM24	CATH (4.3.0)
B	3.60.160.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Mitochondrial biogenesis AIM24	CATH (4.3.0)
A	3.60.160.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Mitochondrial biogenesis AIM24	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01987	Mitochondrial biogenesis AIM24 (AIM24)	Mitochondrial biogenesis AIM24	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR016031	Tryptophan RNA-binding attenuator protein-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR036983	Mitochondrial biogenesis AIM24 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002838	Mitochondrial biogenesis protein AIM24	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.