1YK5

Pyrococcus abyssi rubredoxin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1yk5a_	Small proteins	Rubredoxin-like	Rubredoxin-like	Rubredoxin	Rubredoxin	(Pyrococcus abyssi ) [TaxId: 29292 ],	SCOPe (2.08)
B	d1yk5b_	Small proteins	Rubredoxin-like	Rubredoxin-like	Rubredoxin	Rubredoxin	(Pyrococcus abyssi ) [TaxId: 29292 ],	SCOPe (2.08)
C	d1yk5c_	Small proteins	Rubredoxin-like	Rubredoxin-like	Rubredoxin	Rubredoxin	(Pyrococcus abyssi ) [TaxId: 29292 ],	SCOPe (2.08)
D	d1yk5d_	Small proteins	Rubredoxin-like	Rubredoxin-like	Rubredoxin	Rubredoxin	(Pyrococcus abyssi ) [TaxId: 29292 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Rubredoxin	8068774	4003679	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Rubredoxin-like	8068775	3001257	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Rubredoxin-like	8068775	3001257	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Rubredoxin-like	8068775	3001257	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Rubredoxin-like	8068775	3001257	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00301	e1yk5A1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF00301	ECOD (1.6)
B	PF00301	e1yk5B1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF00301	ECOD (1.6)
C	PF00301	e1yk5C1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF00301	ECOD (1.6)
D	PF00301	e1yk5D1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF00301	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)
B	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)
C	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)
D	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00301	Rubredoxin (Rubredoxin)	Rubredoxin	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Rubredoxin	electron transfer activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR018527	Rubredoxin, iron-binding site	Binding Site
A, B, C, D	IPR024922	Rubredoxin	Family
A, B, C, D	IPR024934	Rubredoxin-like domain	Domain
A, B, C, D	IPR024935	Rubredoxin domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.