1Y9I | pdb_00001y9i

Crystal structure of low temperature requirement C protein from Listeria monocytogenes

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1y9id_	All alpha proteins	YutG-like	YutG-like	YutG-like	Low temperature requirement C protein, LtrC	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
C	d1y9ic_	All alpha proteins	YutG-like	YutG-like	YutG-like	Low temperature requirement C protein, LtrC	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
B	d1y9ib_	All alpha proteins	YutG-like	YutG-like	YutG-like	Low temperature requirement C protein, LtrC	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)
A	d1y9ia_	All alpha proteins	YutG-like	YutG-like	YutG-like	Low temperature requirement C protein, LtrC	(Listeria monocytogenes ) [TaxId: 1639 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	YutG-like	8044292	3001066	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YutG-like	8044292	3001066	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YutG-like	8044292	3001066	SCOP2B (2022-06-29)
A	SCOP2 Family	YutG-like	8031914	4000692	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YutG-like	8044292	3001066	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PgpA	e1y9iD1	A: alpha bundles	X: YutG-like (From Topology)	H: YutG-like (From Topology)	T: YutG-like	F: PgpA	ECOD (1.6)
C	PgpA	e1y9iC1	A: alpha bundles	X: YutG-like (From Topology)	H: YutG-like (From Topology)	T: YutG-like	F: PgpA	ECOD (1.6)
B	PgpA	e1y9iB1	A: alpha bundles	X: YutG-like (From Topology)	H: YutG-like (From Topology)	T: YutG-like	F: PgpA	ECOD (1.6)
A	PgpA	e1y9iA1	A: alpha bundles	X: YutG-like (From Topology)	H: YutG-like (From Topology)	T: YutG-like	F: PgpA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.3760.10	Mainly Alpha	Orthogonal Bundle	YutG-like	PgpA-like	CATH (4.2.0)
C	1.10.3760.10	Mainly Alpha	Orthogonal Bundle	YutG-like	PgpA-like	CATH (4.2.0)
B	1.10.3760.10	Mainly Alpha	Orthogonal Bundle	YutG-like	PgpA-like	CATH (4.2.0)
A	1.10.3760.10	Mainly Alpha	Orthogonal Bundle	YutG-like	PgpA-like	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF04608	Phosphatidylglycerophosphatase A (PgpA)	Phosphatidylglycerophosphatase A	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	low temperature requirement C protein	phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphatidylglycerophosphatase activity phosphatase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	primary metabolic process metabolic process cellular process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR026038	Putative phosphatidylglycerophosphatase	Family
A, B, C, D	IPR007686	YutG/PgpA domain	Domain
A, B, C, D	IPR036681	PgpA-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.