1Y2I | pdb_00001y2i

Crystal Structure of MCSG Target APC27401 from Shigella flexneri

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1y2ib1	Alpha and beta proteins (a+b)	Dodecin subunit-like	YbjQ-like	YbjQ-like	Hypothetical protein YbjQ	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
B	d1y2ib2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
C	d1y2ic1	Alpha and beta proteins (a+b)	Dodecin subunit-like	YbjQ-like	YbjQ-like	Hypothetical protein YbjQ	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
C	d1y2ic2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
D	d1y2id1	Alpha and beta proteins (a+b)	Dodecin subunit-like	YbjQ-like	YbjQ-like	Hypothetical protein YbjQ	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
D	d1y2id2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
E	d1y2ie1	Alpha and beta proteins (a+b)	Dodecin subunit-like	YbjQ-like	YbjQ-like	Hypothetical protein YbjQ	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
E	d1y2ie2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
A	d1y2ia1	Alpha and beta proteins (a+b)	Dodecin subunit-like	YbjQ-like	YbjQ-like	Hypothetical protein YbjQ	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
A	d1y2ia2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	YbjQ-like	8044272	3001160	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YbjQ-like	8044272	3001160	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YbjQ-like	8044272	3001160	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YbjQ-like	8044272	3001160	SCOP2B (2022-06-29)
A	SCOP2 Family	YbjQ-like	8031894	4003633	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YbjQ-like	8044272	3001160	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	YbjQ_1	e1y2iB1	A: a+b two layers	X: Dodecin subunit-like	H: YbjQ-like (From Topology)	T: YbjQ-like	F: YbjQ_1	ECOD (1.6)
C	YbjQ_1	e1y2iC1	A: a+b two layers	X: Dodecin subunit-like	H: YbjQ-like (From Topology)	T: YbjQ-like	F: YbjQ_1	ECOD (1.6)
D	YbjQ_1	e1y2iD1	A: a+b two layers	X: Dodecin subunit-like	H: YbjQ-like (From Topology)	T: YbjQ-like	F: YbjQ_1	ECOD (1.6)
E	YbjQ_1	e1y2iE1	A: a+b two layers	X: Dodecin subunit-like	H: YbjQ-like (From Topology)	T: YbjQ-like	F: YbjQ_1	ECOD (1.6)
A	YbjQ_1	e1y2iA1	A: a+b two layers	X: Dodecin subunit-like	H: YbjQ-like (From Topology)	T: YbjQ-like	F: YbjQ_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.110.70	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	Hypothetical protein apc22750. Chain B	CATH (4.3.0)
C	3.30.110.70	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	Hypothetical protein apc22750. Chain B	CATH (4.3.0)
D	3.30.110.70	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	Hypothetical protein apc22750. Chain B	CATH (4.3.0)
E	3.30.110.70	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	Hypothetical protein apc22750. Chain B	CATH (4.3.0)
A	3.30.110.70	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	Hypothetical protein apc22750. Chain B	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF01906	Putative heavy-metal-binding (YbjQ_1)	Putative heavy-metal-binding	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR002765	Uncharacterised protein family UPF0145, YbjQ-like	Family
A, B, C, D, E	IPR035439	UPF0145 domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.