1Y0J
Zinc fingers as protein recognition motifs: structural basis for the GATA-1/Friend of GATA interaction
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1y0ja_ | Small proteins | Glucocorticoid receptor-like (DNA-binding domain) | Glucocorticoid receptor-like (DNA-binding domain) | Erythroid transcription factor GATA-1 | Erythroid transcription factor GATA-1 | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d1y0jb2 | Small proteins | beta-beta-alpha zinc fingers | beta-beta-alpha zinc fingers | C2HC finger | U-shaped transcription factor, different fingers | fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
B | d1y0jb3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Erythroid transcription factor GATA-1 | 8021601 | 4003617 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8033981 | 3000068 | SCOP2 (2022-06-29) |
B | SCOP2 Family | C2HC finger | 8021602 | 4003606 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | beta-beta-alpha zinc fingers | 8033982 | 3001077 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00320 | e1y0jA1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00320 | ECOD (1.6) |
B | F_UNCLASSIFIED | e1y0jB1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00320 | GATA zinc finger (GATA) | GATA zinc finger | This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000679 | Zinc finger, GATA-type | Domain | |
IPR013088 | Zinc finger, NHR/GATA-type | Homologous Superfamily | |
IPR039355 | Transcription factor GATA | Family | |
IPR013087 | Zinc finger C2H2-type | Domain | |
IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily | |
IPR039746 | FOG family | Family | |
IPR034731 | Zinc finger CCHC FOG-type | Domain |