1Y02 | pdb_00001y02

Crystal Structure of a FYVE-type domain from caspase regulator CARP2


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySAP domain 8031850 4002795 SCOP2 (2022-06-29)
ASCOP2 FamilyFYVE, a phosphatidylinositol-3-phosphate binding domain 8031853 4003768 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySAP domain 8044228 3001760 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyFYVE/PHD zinc finger 8044231 3001459 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AKOG4275e1y02A1 A: alpha arraysX: LEM/SAP HeH motif-likeH: LEM/SAP HeH motifT: LEM/SAP HeH motifF: KOG4275ECOD (1.6)
AFYVE_CARP2e1y02A2 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: FYVE/PHD zinc fingerF: FYVE_CARP2ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.720.140 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain Chain A, Domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF23632RNF34/RFFL SAP domain (SAP_RNF34_RFFL)RNF34/RFFL SAP domainThis entry represents the SAP domains found in the RNF34/RFFL protein family. The RNF34/RFFL protein family consists of E3 ubiquitin-protein ligases that play a crucial role in various biological processes by mediating the ubiquitin-mediated proteas ...This entry represents the SAP domains found in the RNF34/RFFL protein family. The RNF34/RFFL protein family consists of E3 ubiquitin-protein ligases that play a crucial role in various biological processes by mediating the ubiquitin-mediated proteasomal degradation of target proteins. Members of this family are involved in the regulation of apoptosis by ubiquitinating and promoting the degradation of caspases CASP8 and CASP10. They also participate in the regulation of the tumor necrosis factor-mediated signaling pathway, mainly through the 'Lys-48'-linked polyubiquitination and degradation of RIPK1. Additionally, they have a role in the negative regulation of p53/TP53, either directly through ubiquitination or indirectly via the degradation of SFN. Some family members are implicated in metabolic regulation by targeting PPARGC1A for degradation, influencing brown fat cell metabolism, and in innate immunity by the ubiquitination of NOD1. Furthermore, the RFFL subset of proteins is involved in endocytic recycling, highlighting the diversity of functions within the family.
Domain
PF21272E3 ubiquitin-protein ligase CARP1/2, FYVE/PHD zinc finger (FYVE_CARP1-2)E3 ubiquitin-protein ligase CARP1/2, FYVE/PHD zinc fingerThis is the FYVE/PHD zinc finger form E3 ubiquitin-protein ligase RNF34 and RFFL, also known as Caspase regulator 1 and 2 (CARP1/2), respectively [1]. CARP2, also termed E3 ubiquitin-protein ligase rififylin (RFFL) is a novel caspase regulator that r ...This is the FYVE/PHD zinc finger form E3 ubiquitin-protein ligase RNF34 and RFFL, also known as Caspase regulator 1 and 2 (CARP1/2), respectively [1]. CARP2, also termed E3 ubiquitin-protein ligase rififylin (RFFL) is a novel caspase regulator that regulates the p53 signaling pathway through degrading 14-3-3 sigma and stabilizing MDM2. CARP1 ubiquitinates the caspases CASP8 and CASP10, promoting their proteasomal degradation, to negatively regulate cell death downstream of death domain receptors in the extrinsic pathway of apoptosis [2]. It negatively regulates p53/TP53 through its direct ubiquitination and targeting to proteasomal degradation [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
FYVE-RING finger protein SAKURA