1XQ4 | pdb_00001xq4

Crystal Structure of the Putative ApaA Protein from Bordetella pertussis, Northeast Structural Genomics Target BeR40

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1xq4d_	All beta proteins	Immunoglobulin-like beta-sandwich	ApaG-like	ApaG-like	ApaG	(Bordetella pertussis ) [TaxId: 520 ],	SCOPe (2.08)
C	d1xq4c_	All beta proteins	Immunoglobulin-like beta-sandwich	ApaG-like	ApaG-like	ApaG	(Bordetella pertussis ) [TaxId: 520 ],	SCOPe (2.08)
B	d1xq4b_	All beta proteins	Immunoglobulin-like beta-sandwich	ApaG-like	ApaG-like	ApaG	(Bordetella pertussis ) [TaxId: 520 ],	SCOPe (2.08)
A	d1xq4a_	All beta proteins	Immunoglobulin-like beta-sandwich	ApaG-like	ApaG-like	ApaG	(Bordetella pertussis ) [TaxId: 520 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	MPT63/MPB63-like	8055371	3002065	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MPT63/MPB63-like	8055371	3002065	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MPT63/MPB63-like	8055371	3002065	SCOP2B (2022-06-29)
A	SCOP2 Family	ApaG-like	8055370	4007551	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MPT63/MPB63-like	8055371	3002065	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Copper-bind	e1xq4D1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
C	Copper-bind	e1xq4C1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
B	Copper-bind	e1xq4B1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
A	DUF525	e1xq4A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: DUF525	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.1470	Mainly Beta	Sandwich	Immunoglobulin-like	ApaG domain	CATH (4.3.0)
C	2.60.40.1470	Mainly Beta	Sandwich	Immunoglobulin-like	ApaG domain	CATH (4.3.0)
B	2.60.40.1470	Mainly Beta	Sandwich	Immunoglobulin-like	ApaG domain	CATH (4.3.0)
A	2.60.40.1470	Mainly Beta	Sandwich	Immunoglobulin-like	ApaG domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF04379	ApaG domain (DUF525)	ApaG domain	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR050718	ApaG-like	Family
A, B, C, D	IPR023065	Uncharacterised protein family ApaG	Family
A, B, C, D	IPR007474	ApaG domain	Domain
A, B, C, D	IPR036767	ApaG domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.