1XLS

Crystal structure of the mouse CAR/RXR LBD heterodimer bound to TCPOBOP and 9cRA and a TIF2 peptide containg the third LXXLL motifs


Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1xlsa_ All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Retinoid-X receptor alpha (RXR-alpha) human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1xlsb_ All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Retinoid-X receptor alpha (RXR-alpha) human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd1xlsc_ All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Retinoid-X receptor alpha (RXR-alpha) human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd1xlsd_ All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Retinoid-X receptor alpha (RXR-alpha) human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed1xlse_ All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Orphan nuclear receptor NR1I3 (CAR) house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Fd1xlsf_ All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Orphan nuclear receptor NR1I3 (CAR) house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Gd1xlsg_ All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Orphan nuclear receptor NR1I3 (CAR) house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Hd1xlsh_ All alpha proteins Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Orphan nuclear receptor NR1I3 (CAR) house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyNuclear receptor ligand-binding domain8038695 3001442 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNuclear receptor ligand-binding domain8038695 3001442 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyNuclear receptor ligand-binding domain8038695 3001442 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyNuclear receptor ligand-binding domain8038695 3001442 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyNuclear receptor ligand-binding domain8044077 3001442 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNuclear receptor ligand-binding domain8044077 3001442 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyNuclear receptor ligand-binding domain8044077 3001442 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyNuclear receptor ligand-binding domain8044077 3001442 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHormone_recepe1xlsA1 A: alpha arraysX: Nuclear receptor ligand-binding domain (From Topology)H: Nuclear receptor ligand-binding domain (From Topology)T: Nuclear receptor ligand-binding domainF: Hormone_recepECOD (1.6)
BHormone_recepe1xlsB1 A: alpha arraysX: Nuclear receptor ligand-binding domain (From Topology)H: Nuclear receptor ligand-binding domain (From Topology)T: Nuclear receptor ligand-binding domainF: Hormone_recepECOD (1.6)
CHormone_recepe1xlsC1 A: alpha arraysX: Nuclear receptor ligand-binding domain (From Topology)H: Nuclear receptor ligand-binding domain (From Topology)T: Nuclear receptor ligand-binding domainF: Hormone_recepECOD (1.6)
DHormone_recepe1xlsD1 A: alpha arraysX: Nuclear receptor ligand-binding domain (From Topology)H: Nuclear receptor ligand-binding domain (From Topology)T: Nuclear receptor ligand-binding domainF: Hormone_recepECOD (1.6)
EHormone_recepe1xlsE1 A: alpha arraysX: Nuclear receptor ligand-binding domain (From Topology)H: Nuclear receptor ligand-binding domain (From Topology)T: Nuclear receptor ligand-binding domainF: Hormone_recepECOD (1.6)
FHormone_recepe1xlsF1 A: alpha arraysX: Nuclear receptor ligand-binding domain (From Topology)H: Nuclear receptor ligand-binding domain (From Topology)T: Nuclear receptor ligand-binding domainF: Hormone_recepECOD (1.6)
GHormone_recepe1xlsG1 A: alpha arraysX: Nuclear receptor ligand-binding domain (From Topology)H: Nuclear receptor ligand-binding domain (From Topology)T: Nuclear receptor ligand-binding domainF: Hormone_recepECOD (1.6)
HHormone_recepe1xlsH1 A: alpha arraysX: Nuclear receptor ligand-binding domain (From Topology)H: Nuclear receptor ligand-binding domain (From Topology)T: Nuclear receptor ligand-binding domainF: Hormone_recepECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00104Ligand-binding domain of nuclear hormone receptor (Hormone_recep)Ligand-binding domain of nuclear hormone receptorThis all helical domain is involved in binding the hormone in these receptors.Domain
E, F, G, H
PF00104Ligand-binding domain of nuclear hormone receptor (Hormone_recep)Ligand-binding domain of nuclear hormone receptorThis all helical domain is involved in binding the hormone in these receptors.Domain
I, J, K, L, M
PF16279Domain of unknown function (DUF4927) (DUF4927)Domain of unknown function (DUF4927)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Retinoic acid receptor RXR-alpha
E, F, G, H
Orphan nuclear receptor NR1I3
I, J, K, L, M
Nuclear receptor coactivator 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR001628Zinc finger, nuclear hormone receptor-typeDomain
A, B, C, D
IPR021780Nuclear/hormone receptor activator site AF-1Domain
A, B, C, D
IPR013088Zinc finger, NHR/GATA-typeHomologous Superfamily
A, B, C, D
IPR000003Retinoid X receptor/HNF4Family
A, B, C, D
IPR001723Nuclear hormone receptorFamily
A, B, C, D
IPR000536Nuclear hormone receptor, ligand-binding domainDomain
A, B, C, D
IPR035500Nuclear hormone receptor-like domain superfamilyHomologous Superfamily
E, F, G, H
IPR001723Nuclear hormone receptorFamily
E, F, G, H
IPR001628Zinc finger, nuclear hormone receptor-typeDomain
E, F, G, H
IPR001728Thyroid hormone receptorFamily
E, F, G, H
IPR013088Zinc finger, NHR/GATA-typeHomologous Superfamily
E, F, G, H
IPR000536Nuclear hormone receptor, ligand-binding domainDomain
E, F, G, H
IPR035500Nuclear hormone receptor-like domain superfamilyHomologous Superfamily
I, J, K, L, M
IPR010011Nuclear receptor coactivator, DUF1518Domain
I, J, K, L, M
IPR009110Nuclear receptor coactivator, interlockingHomologous Superfamily
I, J, K, L, M
IPR017426Nuclear receptor coactivatorFamily
I, J, K, L, M
IPR014935Nuclear receptor coactivator, receptor-binding domainDomain
I, J, K, L, M
IPR014920Nuclear receptor coactivator, Ncoa-type, interlockingDomain
I, J, K, L, M
IPR035965PAS domain superfamilyHomologous Superfamily
I, J, K, L, M
IPR028822Nuclear receptor coactivator 2, basic helix-loop-helixDomain
I, J, K, L, M
IPR036638Helix-loop-helix DNA-binding domain superfamilyHomologous Superfamily
I, J, K, L, M
IPR037077Nuclear receptor coactivator, Ncoa-type, interlocking domain superfamilyHomologous Superfamily
I, J, K, L, M
IPR013767PAS foldDomain
I, J, K, L, M
IPR000014PAS domainDomain
I, J, K, L, M
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainDomain
I, J, K, L, M
IPR032565Nuclear receptor coactivator 2/3, DUF4927Domain