1X7O
Crystal structure of the SpoU Methyltransferase AviRb from Streptomyces viridochromogenes
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SpoU_sub_bind_like | e1x7oA3 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: SpoU_sub_bind_like | ECOD (1.6) |
A | SpoU_methylase | e1x7oA4 | A: a/b three-layered sandwiches | X: alpha/beta knot (From Topology) | H: alpha/beta knot (From Topology) | T: alpha/beta knot | F: SpoU_methylase | ECOD (1.6) |
B | SpoU_sub_bind_like | e1x7oB1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: SpoU_sub_bind_like | ECOD (1.6) |
B | SpoU_methylase | e1x7oB2 | A: a/b three-layered sandwiches | X: alpha/beta knot (From Topology) | H: alpha/beta knot (From Topology) | T: alpha/beta knot | F: SpoU_methylase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1330.30 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
A | 3.40.1280.10 | Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | SPOUT methyltransferase, trefoil knot domain | CATH (4.3.0) |
B | 3.30.1330.30 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
B | 3.40.1280.10 | Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | SPOUT methyltransferase, trefoil knot domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22655 | SpoU L30e-like domain (SpoU_sub_bind_like) | SpoU L30e-like domain | This domain is found in a number of rRNA methyltransferases that belong to SpoU family. They are composed of two domains: N-terminal, represented by this entry, RNA-binding domain and C-terminal domain responsible for AdoMet-binding, catalysis and di ... | Domain | |
PF00588 | SpoU rRNA Methylase family (SpoU_methylase) | SpoU rRNA Methylase family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001537 | tRNA/rRNA methyltransferase, SpoU type | Domain | |
IPR029026 | tRNA (guanine-N1-)-methyltransferase, N-terminal | Homologous Superfamily | |
IPR051259 | Ribosomal RNA Methyltransferase | Family | |
IPR029028 | Alpha/beta knot methyltransferases | Homologous Superfamily | |
IPR029064 | Ribosomal protein eL30-like superfamily | Homologous Superfamily |