1WZX | pdb_00001wzx

Crystal Structure of Family 30 Carbohydrate Binding Module.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1wzxd1	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	Family 30 carbohydrate binding module, CBM30 (PKD repeat)	Endoglucanase CelJ	(Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ],	SCOPe (2.08)
C	d1wzxc1	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	Family 30 carbohydrate binding module, CBM30 (PKD repeat)	Endoglucanase CelJ	(Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ],	SCOPe (2.08)
B	d1wzxb1	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	Family 30 carbohydrate binding module, CBM30 (PKD repeat)	Endoglucanase CelJ	(Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ],	SCOPe (2.08)
A	d1wzxa1	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	Family 30 carbohydrate binding module, CBM30 (PKD repeat)	Endoglucanase CelJ	(Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	galactose-binding domain-like	8041770	3000087	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	galactose-binding domain-like	8041770	3000087	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	galactose-binding domain-like	8041770	3000087	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	galactose-binding domain-like	8041770	3000087	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	CBM_11_like	e1wzxD1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: CBM_11_like	ECOD (1.6)
C	CBM_11_like	e1wzxC1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: CBM_11_like	ECOD (1.6)
B	CBM_11_like	e1wzxB1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: CBM_11_like	ECOD (1.6)
A	CBM_11_like	e1wzxA1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: CBM_11_like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.120.430	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding lectin	CATH (4.3.0)
C	2.60.120.430	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding lectin	CATH (4.3.0)
B	2.60.120.430	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding lectin	CATH (4.3.0)
A	2.60.120.430	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding lectin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21582	Carbohydrate binding domain 30 (CBM30)	Carbohydrate binding domain 30	This carbohydrate binding domain is found at the N-terminal end of Glycoside hydrolase family 9 (GH9) from Acetivibrio thermocellus (Swiss:A3DD30). This protein contains GH9 and GH44 as catalytic modules (Pfam:PF00759 and Pfam:PF12891). It also prese ...	This carbohydrate binding domain is found at the N-terminal end of Glycoside hydrolase family 9 (GH9) from Acetivibrio thermocellus (Swiss:A3DD30). This protein contains GH9 and GH44 as catalytic modules (Pfam:PF00759 and Pfam:PF12891). It also presents a family 30 carbohydrate binding domain (CBM30), which displays affinity for beta-1,4-glucopolymers and plays a pivotal role in the function of of GH9, a typical processive endoglucanase. This domain adopts a beta-sandwich fold with two five-stranded beta-sheets [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	COG3291: FOG: PKD repeat	hydrolase activity, acting on glycosyl bonds cellulase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process macromolecule metabolic process cellulose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR002105	Dockerin type I repeat	Repeat
A, B, C, D	IPR016134	Dockerin domain	Domain
A, B, C, D	IPR022409	PKD/Chitinase domain	Domain
A, B, C, D	IPR000601	PKD domain	Domain
A, B, C, D	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
A, B, C, D	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A, B, C, D	IPR048758	Carbohydrate binding domain 30	Domain
A, B, C, D	IPR035986	PKD domain superfamily	Homologous Superfamily
A, B, C, D	IPR024745	Glycoside hydrolase, family 44, catalytic domain	Domain
A, B, C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B, C, D	IPR001701	Glycoside hydrolase family 9	Domain
A, B, C, D	IPR036439	Dockerin domain superfamily	Homologous Superfamily
A, B, C, D	IPR013780	Glycosyl hydrolase, all-beta	Homologous Superfamily
A, B, C, D	IPR004197	Cellulase, Ig-like domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Galactose-binding domain	N-terminal domain of cellulase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.