Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1wyva_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P) Glycine dehydrogenase (decarboxylating) subunit 1 (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Cd1wyvc_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P) Glycine dehydrogenase (decarboxylating) subunit 1 (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Ed1wyve_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P) Glycine dehydrogenase (decarboxylating) subunit 1 (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Gd1wyvg_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P) Glycine dehydrogenase (decarboxylating) subunit 1 (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Bd1wyvb_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P) Glycine dehydrogenase subunit 2 (P-protein) (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Dd1wyvd_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P) Glycine dehydrogenase subunit 2 (P-protein) (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Fd1wyvf_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P) Glycine dehydrogenase subunit 2 (P-protein) (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Hd1wyvh_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P) Glycine dehydrogenase subunit 2 (P-protein) (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPLP-dependent transferases 8033406 3000954 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPLP-dependent transferases 8033406 3000954 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPLP-dependent transferases 8033406 3000954 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPLP-dependent transferases 8033406 3000954 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPLP-dependent transferases 8033407 3000954 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPLP-dependent transferases 8033407 3000954 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPLP-dependent transferases 8033407 3000954 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPLP-dependent transferases 8033407 3000954 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AUNK_F_TYPEe1wyvA2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
AGDC-P_Ne1wyvA1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: GDC-P_NECOD (1.6)
CUNK_F_TYPEe1wyvC2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
CGDC-P_Ne1wyvC1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: GDC-P_NECOD (1.6)
EUNK_F_TYPEe1wyvE2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
EGDC-P_Ne1wyvE1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: GDC-P_NECOD (1.6)
GUNK_F_TYPEe1wyvG2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: UNK_F_TYPEECOD (1.6)
GGDC-P_Ne1wyvG1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: GDC-P_NECOD (1.6)
BGcvP2e1wyvB2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: GcvP2ECOD (1.6)
BAminotran_5_Ne1wyvB1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: Aminotran_5_NECOD (1.6)
DGcvP2e1wyvD2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: GcvP2ECOD (1.6)
DAminotran_5_Ne1wyvD1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: Aminotran_5_NECOD (1.6)
FGcvP2e1wyvF2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: GcvP2ECOD (1.6)
FAminotran_5_Ne1wyvF1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: Aminotran_5_NECOD (1.6)
HGcvP2e1wyvH2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: GcvP2ECOD (1.6)
HAminotran_5_Ne1wyvH1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: Aminotran_5_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
A3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
C3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
C3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
E3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
E3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
G3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
G3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
B6.20.440.10 Special Other non-globular Translocated Intimin Receptor Chain TCATH (4.3.0)
B3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
B3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
D6.20.440.10 Special Other non-globular Translocated Intimin Receptor Chain TCATH (4.3.0)
D3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
D3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
F6.20.440.10 Special Other non-globular Translocated Intimin Receptor Chain TCATH (4.3.0)
F3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
F3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
H6.20.440.10 Special Other non-globular Translocated Intimin Receptor Chain TCATH (4.3.0)
H3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
H3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G
PF02347Glycine cleavage system P-protein (GDC-P)Glycine cleavage system P-proteinThis family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or ...This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T [2]. The reaction catalysed by this protein is:- Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2
Domain
B, D, F, H
PF21478Glycine dehydrogenase, C-terminal domain (GcvP2_C)Glycine dehydrogenase, C-terminal domainThis entry includes Glycine dehydrogenases, also known as glycine cleavage system P protein, which bind the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO2 is released and the remaining methylamine moiety is then transferre ...This entry includes Glycine dehydrogenases, also known as glycine cleavage system P protein, which bind the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO2 is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. The monomer consists of two domains, a large domain and a small domain. This entry represents the small domain, which has a complex alpha/beta structure [1,2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G
glycine dehydrogenase (decarboxylating) subunit 1 -
B, D, F, H
glycine dehydrogenase subunit 2 (P-protein)