1WY9 | pdb_00001wy9

Crystal structure of microglia-specific protein, Iba1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PTZ00184_like	e1wy9A1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PTZ00184_like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Allograft inflammatory factor 1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding actin filament binding	multicellular organismal process regulation of cellular process positive regulation of biological process positive regulation of macromolecule biosynthetic process regulation of fibroblast growth factor production positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process multicellular organismal process regulation of cellular process positive regulation of biological process positive regulation of macromolecule biosynthetic process regulation of fibroblast growth factor production positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process positive regulation of fibroblast growth factor production fibroblast growth factor production biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process membrane organization import into cell transport establishment of localization vesicle-mediated transport cellular component organization localization phagocytosis, engulfment membrane invagination phagocytosis cellular component organization or biogenesis endocytosis plasma membrane invagination interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization protein-containing complex organization actin filament organization cellular component biogenesis organelle organization cellular component assembly protein-containing complex assembly actin filament-based process supramolecular fiber organization cytoskeleton organization negative regulation of cell population proliferation cell population proliferation regulation of smooth muscle cell proliferation negative regulation of biological process smooth muscle cell proliferation negative regulation of smooth muscle cell proliferation regulation of cell population proliferation negative regulation of cellular process muscle cell proliferation cellular response to stimulus positive regulation of locomotion regulation of cell motility positive regulation of smooth muscle cell chemotaxis response to stimulus regulation of smooth muscle cell chemotaxis regulation of response to external stimulus regulation of smooth muscle cell migration positive regulation of smooth muscle cell migration positive regulation of chemotaxis positive regulation of cell migration muscle cell migration positive regulation of response to stimulus positive regulation of response to external stimulus taxis positive regulation of cell motility smooth muscle cell chemotaxis regulation of cell migration cell migration cell motility locomotion cell chemotaxis chemotaxis response to external stimulus regulation of chemotaxis smooth muscle cell migration cellular response to chemical stimulus regulation of response to stimulus response to chemical regulation of locomotion negative regulation of locomotion negative regulation of chemotaxis negative regulation of cell migration negative regulation of response to stimulus negative regulation of smooth muscle cell chemotaxis negative regulation of smooth muscle cell migration negative regulation of response to external stimulus negative regulation of cell motility parallel actin filament bundle assembly actin filament bundle organization actin filament bundle assembly response to oxidative stress cellular response to stress response to stress cellular response to oxidative stress cellular response to chemical stress regulation of cell cycle phase transition cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle process positive regulation of mitotic cell cycle cell cycle regulation of cell cycle cell cycle process positive regulation of G1/S transition of mitotic cell cycle regulation of cell cycle process positive regulation of cell cycle regulation of mitotic cell cycle phase transition positive regulation of cell cycle G1/S phase transition mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle positive regulation of cell cycle phase transition G1/S transition of mitotic cell cycle mitotic cell cycle phase transition small GTPase-mediated signal transduction signaling Rac protein signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction regulation of chemokine production chemokine production positive regulation of chemokine production biological process involved in interspecies interaction between organisms immune response response to other organism defense response response to type II interferon response to cytokine defense response to symbiont cellular response to type II interferon response to biotic stimulus response to peptide immune system process defense response to other organism innate immune response cellular response to cytokine stimulus response to external biotic stimulus plasma membrane bounded cell projection organization ruffle organization cell projection organization plasma membrane bounded cell projection assembly ruffle assembly cell projection assembly positive regulation of monocyte chemotaxis regulation of monocyte chemotaxis myeloid leukocyte migration positive regulation of mononuclear cell migration regulation of immune system process regulation of mononuclear cell migration positive regulation of immune system process regulation of leukocyte chemotaxis regulation of leukocyte migration positive regulation of leukocyte migration positive regulation of leukocyte chemotaxis monocyte chemotaxis leukocyte migration mononuclear cell migration leukocyte chemotaxis regulation of lymphocyte migration positive regulation of lymphocyte migration positive regulation of T cell migration lymphocyte migration regulation of T cell migration T cell migration actin crosslink formation positive regulation of cell population proliferation positive regulation of smooth muscle cell proliferation inflammatory response regulation of leukocyte activation regulation of cell activation positive regulation of cell activation T cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of leukocyte proliferation positive regulation of T cell activation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of mononuclear cell proliferation regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation regulation of T cell proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation myeloid leukocyte activation macrophage activation leukocyte activation involved in inflammatory response microglial cell activation glial cell activation neuroinflammatory response	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium ruffle plasma membrane membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane intracellular anatomical structure cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium ruffle plasma membrane membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane intracellular anatomical structure cytoplasm cytosol glial cell projection perinuclear region of cytoplasm polymeric cytoskeletal fiber actin filament intracellular membraneless organelle actin cytoskeleton intracellular organelle cytoskeleton organelle membraneless organelle supramolecular fiber supramolecular polymer supramolecular complex phagocytic cup membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR049025	Allograft inflammatory factor 1-like, EF-hand domain pair	Domain
A	IPR002048	EF-hand domain	Domain
A	IPR011992	EF-hand domain pair	Homologous Superfamily
A	IPR042433	Allograft inflammatory factor 1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.