1WMK | pdb_00001wmk

Human death-associated kinase DRP-1, mutant S308D d40

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062458	3000066	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062458	3000066	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062458	3000066	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062458	3000066	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062458	3000066	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062458	3000066	SCOP2B (2022-06-29)
B [auth E]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062458	3000066	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Protein kinase-like (PK-like)	8062458	3000066	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	MATH_2	e1wmkC1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: MATH_2	ECOD (develop294)
E [auth F]	MATH_2	e1wmkF1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: MATH_2	ECOD (develop294)
F [auth D]	MATH_2	e1wmkD1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: MATH_2	ECOD (develop294)
H [auth G]	Pkinase	e1wmkG2	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (develop294)
G [auth H]	MATH_2	e1wmkH1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: MATH_2	ECOD (develop294)
D [auth B]	MATH_2	e1wmkB1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: MATH_2	ECOD (develop294)
B [auth E]	Pkinase	e1wmkE2	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (develop294)
A	PTS_EIIA_2	e1wmkA1	A: alpha bundles	X: Globin-like	H: Globin-like	T: Globin-like	F: PTS_EIIA_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
C	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
E [auth F]	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
E [auth F]	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
F [auth D]	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
F [auth D]	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
H [auth G]	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
H [auth G]	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
G [auth H]	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
G [auth H]	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
D [auth B]	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
D [auth B]	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
B [auth E]	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
B [auth E]	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
A	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
A	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
A	1.20.5.460	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth E], C, D [auth B], E [auth F], A, B [auth E], C, D [auth B], E [auth F], F [auth D], G [auth H], H [auth G]	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth E], C, D [auth B], E [auth F], A, B [auth E], C, D [auth B], E [auth F], F [auth D], G [auth H], H [auth G]	Death-associated protein kinase 2	catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity protein binding calmodulin binding identical protein binding	cellular response to stimulus regulation of cellular process response to stimulus signaling regulation of signal transduction regulation of programmed cell death regulation of intrinsic apoptotic signaling pathway intracellular signal transduction cell communication regulation of intracellular signal transduction signal transduction intrinsic apoptotic signaling pathway regulation of biological process regulation of signaling cellular response to stimulus regulation of cellular process response to stimulus signaling regulation of signal transduction regulation of programmed cell death regulation of intrinsic apoptotic signaling pathway intracellular signal transduction cell communication regulation of intracellular signal transduction signal transduction intrinsic apoptotic signaling pathway regulation of biological process regulation of signaling regulation of apoptotic process biological regulation cell death apoptotic signaling pathway regulation of response to stimulus regulation of cell communication cellular process apoptotic process programmed cell death regulation of apoptotic signaling pathway positive regulation of programmed cell death positive regulation of biological process positive regulation of apoptotic process positive regulation of cellular process positive regulation of locomotion regulation of cell motility positive regulation of chemotaxis positive regulation of cell migration positive regulation of neutrophil chemotaxis taxis cell migration regulation of immune system process positive regulation of immune system process chemotaxis regulation of leukocyte chemotaxis regulation of leukocyte migration response to external stimulus positive regulation of leukocyte chemotaxis neutrophil migration granulocyte migration leukocyte migration positive regulation of granulocyte chemotaxis response to chemical regulation of locomotion regulation of neutrophil chemotaxis regulation of neutrophil migration regulation of response to external stimulus neutrophil chemotaxis positive regulation of response to stimulus regulation of granulocyte chemotaxis positive regulation of response to external stimulus positive regulation of cell motility regulation of cell migration myeloid leukocyte migration cell motility locomotion cell chemotaxis positive regulation of leukocyte migration positive regulation of neutrophil migration regulation of chemotaxis cellular response to chemical stimulus immune system process granulocyte chemotaxis leukocyte chemotaxis protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process eosinophil migration eosinophil chemotaxis regulation of eosinophil chemotaxis positive regulation of eosinophil chemotaxis positive regulation of eosinophil migration regulation of eosinophil migration catabolic process autophagy regulation of catabolic process regulation of autophagy process utilizing autophagic mechanism regulation of metabolic process anoikis	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle membrane-enclosed lumen vacuolar lumen vacuole autophagosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle organelle lumen organelle autophagosome lumen cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle membrane-enclosed lumen vacuolar lumen vacuole autophagosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle organelle lumen organelle autophagosome lumen cytoplasmic vesicle intracellular vesicle vesicle Golgi apparatus endomembrane system nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth E], C, D [auth B], E [auth F], A, B [auth E], C, D [auth B], E [auth F], F [auth D], G [auth H], H [auth G]	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B [auth E], C, D [auth B], E [auth F], A, B [auth E], C, D [auth B], E [auth F], F [auth D], G [auth H], H [auth G]	IPR000719	Protein kinase domain	Domain
A, B [auth E], C, D [auth B], E [auth F], A, B [auth E], C, D [auth B], E [auth F], F [auth D], G [auth H], H [auth G]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B [auth E], C, D [auth B], E [auth F], A, B [auth E], C, D [auth B], E [auth F], F [auth D], G [auth H], H [auth G]	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth E], C, D [auth B], E [auth F], A, B [auth E], C, D [auth B], E [auth F], F [auth D], G [auth H], H [auth G]	Pharos: Q9UIK4	Hepatomegaly acute promyelocytic leukemia breast fibroadenoma lung cancer osteosarcoma primary myelofibrosis atrial fibrillation cystic fibrosis invasive ductal breast carcinoma lung carcinoma ulcerative colitis breast carcinoma ductal breast carcinoma in situ lung adenocarcinoma non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.