1WJ9 | pdb_00001wj9

Crystal structure of a CRISPR-associated protein from thermus thermophilus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1wj9a1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated endoribonuclease Cse3-like	CRISPR-associated endoribonuclease Cse3	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CRISPR-associated protein	8031230	4003815	SCOP2 (2022-06-29)
A	SCOP2 Family	CRISPR-associated protein	8031231	4003815	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CRISPR-associated proteins	8043608	3001554	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CRISPR-associated proteins	8043609	3001554	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CRISPR_assoc_C	e1wj9A2	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)	T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related	F: CRISPR_assoc_C	ECOD (1.6)
A	CRISPR_assoc_N	e1wj9A1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)	T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related	F: CRISPR_assoc_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.1200	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)
A	3.30.70.1210	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Crispr-associated protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF08798	CRISPR associated protein (CRISPR_assoc)	CRISPR associated protein	This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	CRISPR-associated protein	endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity RNA binding binding nucleic acid binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR010179	CRISPR-associated protein Cse3	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.