1W1Y

Crystal structure of S. marcescens chitinase B in complex with the cyclic dipeptide inhibitor cyclo-(L-Tyr-L-Pro) at 1.85 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1w1ya3	All beta proteins	WW domain-like	Carbohydrate binding domain	Carbohydrate binding domain	Chitinase B, C-terminal domain	(Serratia marcescens ) [TaxId: 615 ],	SCOPe (2.08)
A	d1w1ya1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Type II chitinase	Chitinase B, catalytic domain	(Serratia marcescens ) [TaxId: 615 ],	SCOPe (2.08)
A	d1w1ya2	Alpha and beta proteins (a+b)	FKBP-like	Chitinase insertion domain	Chitinase insertion domain	Chitinase B	(Serratia marcescens ) [TaxId: 615 ],	SCOPe (2.08)
B	d1w1yb3	All beta proteins	WW domain-like	Carbohydrate binding domain	Carbohydrate binding domain	Chitinase B, C-terminal domain	(Serratia marcescens ) [TaxId: 615 ],	SCOPe (2.08)
B	d1w1yb1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Type II chitinase	Chitinase B, catalytic domain	(Serratia marcescens ) [TaxId: 615 ],	SCOPe (2.08)
B	d1w1yb2	Alpha and beta proteins (a+b)	FKBP-like	Chitinase insertion domain	Chitinase insertion domain	Chitinase B	(Serratia marcescens ) [TaxId: 615 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	(Trans)glycosidases	8032616	3000313	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Carbohydrate binding domain-like	8032614	3001641	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	(Trans)glycosidases	8032616	3000313	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Chitinase insertion domain	8032617	3000666	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8032616	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Carbohydrate binding domain-like	8032614	3001641	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8032616	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Chitinase insertion domain	8032617	3000666	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e1w1yA2	A: beta meanders	X: WW domain-like	H: Carbohydrate binding domain (From Topology)	T: Carbohydrate binding domain	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e1w1yA1	A: a+b two layers	X: FKBP-like	H: Chitinase insertion domain (From Topology)	T: Chitinase insertion domain	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF00704	e1w1yA3	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00704	ECOD (1.6)
B	F_UNCLASSIFIED	e1w1yB2	A: beta meanders	X: WW domain-like	H: Carbohydrate binding domain (From Topology)	T: Carbohydrate binding domain	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e1w1yB1	A: a+b two layers	X: FKBP-like	H: Chitinase insertion domain (From Topology)	T: Chitinase insertion domain	F: F_UNCLASSIFIED	ECOD (1.6)
B	PF00704	e1w1yB3	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF00704	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	3.10.50.10	Alpha Beta	Roll	Chitinase A	domain 3	CATH (4.3.0)
A	2.10.10.20	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)	Carbohydrate-binding module superfamily 5/12	CATH (4.3.0)
B	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
B	3.10.50.10	Alpha Beta	Roll	Chitinase A	domain 3	CATH (4.3.0)
B	2.10.10.20	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)	Carbohydrate-binding module superfamily 5/12	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00704	Glycosyl hydrolases family 18 (Glyco_hydro_18)	Glycosyl hydrolases family 18	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	CHITINASE B	binding carbohydrate binding chitin binding carbohydrate derivative binding hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	carbohydrate metabolic process catabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process organic substance metabolic process polysaccharide catabolic process metabolic process macromolecule metabolic process organic substance catabolic process	extracellular region cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011583	Chitinase II	Domain
A, B	IPR029070	Chitinase insertion domain superfamily	Homologous Superfamily
A, B	IPR001579	Glycosyl hydrolases family 18 (GH18) active site	Active Site
A, B	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B	IPR003610	Carbohydrate binding module family 5/12	Domain
A, B	IPR036573	Carbohydrate-binding module superfamily 5/12	Homologous Superfamily
A, B	IPR001223	Glycoside hydrolase family 18, catalytic domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.