1VZM | pdb_00001vzm

OSTEOCALCIN FROM FISH ARGYROSOMUS REGIUS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vzma_	Small proteins	GLA-domain	GLA-domain	automated matches	automated matches	(Argyrosomus regius ) [TaxId: 172269 ],	SCOPe (2.08)
B	d1vzmb_	Small proteins	GLA-domain	GLA-domain	automated matches	automated matches	(Argyrosomus regius ) [TaxId: 172269 ],	SCOPe (2.08)
C	d1vzmc_	Small proteins	GLA-domain	GLA-domain	automated matches	automated matches	(Argyrosomus regius ) [TaxId: 172269 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	tRNA-synt_1b	e1vzmB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (v294.1)
C	tRNA-synt_1b	e1vzmC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: tRNA-synt_1b	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	OSTEOCALCIN	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding hormone activity molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity hydroxyapatite binding structural molecule activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding hormone activity molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity hydroxyapatite binding structural molecule activity structural constituent of bone	developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation cell population proliferation type B pancreatic cell proliferation epithelial cell proliferation bone mineralization animal organ development anatomical structure development biomineral tissue development developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation cell population proliferation type B pancreatic cell proliferation epithelial cell proliferation bone mineralization animal organ development anatomical structure development biomineral tissue development tissue development multicellular organism development skeletal system development bone development system development regulation of multicellular organismal development regulation of biological process negative regulation of bone development regulation of developmental process negative regulation of developmental process biological regulation negative regulation of biological process regulation of bone development regulation of multicellular organismal process negative regulation of multicellular organismal process cellular response to stimulus cellular response to nitrogen compound response to stimulus response to endogenous stimulus response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical response to insulin cellular response to insulin stimulus cellular response to hormone stimulus regulation of cellular process regulation of cellular response to insulin stimulus regulation of response to stimulus response to nutrient levels response to ketone response to nutrient response to vitamin K response to vitamin chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis regulation of biomineral tissue development regulation of bone mineralization regulation of ossification	cellular anatomical structure extracellular region extracellular matrix external encapsulating structure

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR058704	Osteocalcin-like, C-terminal domain	Domain
A, B, C	IPR000294	Gamma-carboxyglutamic acid-rich (GLA) domain	Domain
A, B, C	IPR039176	Osteocalcin	Family
A, B, C	IPR035972	Gamma-carboxyglutamic acid-rich (GLA) domain superfamily	Homologous Superfamily
A, B, C	IPR002384	Osteocalcin/matrix Gla protein	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C	CGU	Parent Component: GLU RESID: AA0032 PSI-MOD : L-gamma-carboxyglutamic acid MOD:00041

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.