1VZ0 | pdb_00001vz0

Chromosome segregation protein Spo0J from Thermus thermophilus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d1vz0h1	All alpha proteins	DNA/RNA-binding 3-helical bundle	KorB DNA-binding domain-like	KorB DNA-binding domain-like	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
H	d1vz0h2	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	ParB-like nuclease domain	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
G	d1vz0g1	All alpha proteins	DNA/RNA-binding 3-helical bundle	KorB DNA-binding domain-like	KorB DNA-binding domain-like	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
G	d1vz0g2	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	ParB-like nuclease domain	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
F	d1vz0f1	All alpha proteins	DNA/RNA-binding 3-helical bundle	KorB DNA-binding domain-like	KorB DNA-binding domain-like	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
F	d1vz0f2	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	ParB-like nuclease domain	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
E	d1vz0e1	All alpha proteins	DNA/RNA-binding 3-helical bundle	KorB DNA-binding domain-like	KorB DNA-binding domain-like	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
E	d1vz0e2	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	ParB-like nuclease domain	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
D	d1vz0d1	All alpha proteins	DNA/RNA-binding 3-helical bundle	KorB DNA-binding domain-like	KorB DNA-binding domain-like	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
D	d1vz0d2	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	ParB-like nuclease domain	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
C	d1vz0c1	All alpha proteins	DNA/RNA-binding 3-helical bundle	KorB DNA-binding domain-like	KorB DNA-binding domain-like	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
C	d1vz0c2	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	ParB-like nuclease domain	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
B	d1vz0b1	All alpha proteins	DNA/RNA-binding 3-helical bundle	KorB DNA-binding domain-like	KorB DNA-binding domain-like	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
B	d1vz0b2	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	ParB-like nuclease domain	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
A	d1vz0a1	All alpha proteins	DNA/RNA-binding 3-helical bundle	KorB DNA-binding domain-like	KorB DNA-binding domain-like	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)
A	d1vz0a2	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	ParB-like nuclease domain	Putative partitioning protein ParB/Spo0J	(Thermus thermophilus HB27 ) [TaxId: 262724 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	ParB/Sulfiredoxin	8041556	3001301	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	KorB DNA-binding domain-like	8041555	3001083	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	KorB DNA-binding domain-like	8041555	3001083	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ParB/Sulfiredoxin	8041556	3001301	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ParB/Sulfiredoxin	8041556	3001301	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	KorB DNA-binding domain-like	8041555	3001083	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ParB/Sulfiredoxin	8041556	3001301	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	KorB DNA-binding domain-like	8041555	3001083	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ParB/Sulfiredoxin	8041556	3001301	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	KorB DNA-binding domain-like	8041555	3001083	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	KorB DNA-binding domain-like	8041555	3001083	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ParB/Sulfiredoxin	8041556	3001301	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ParB/Sulfiredoxin	8041556	3001301	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	KorB DNA-binding domain-like	8041555	3001083	SCOP2B (2022-06-29)
A	SCOP2 Family	KorB DNA-binding domain-like	8029176	4002305	SCOP2 (2022-06-29)
A	SCOP2 Family	ParB-like nuclease domain	8029177	4002475	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	KorB DNA-binding domain-like	8041555	3001083	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ParB/Sulfiredoxin	8041556	3001301	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	tRNA-synt_2d	e1vz0H1	A: alpha bundles	X: barrel domains in phase 1 flagellin	H: Class II aaRS and biotin synthetases	T: Class II aaRS and biotin synthetases	F: tRNA-synt_2d	ECOD (develop294)
G	tRNA-synt_2d	e1vz0G1	A: alpha bundles	X: barrel domains in phase 1 flagellin	H: Class II aaRS and biotin synthetases	T: Class II aaRS and biotin synthetases	F: tRNA-synt_2d	ECOD (develop294)
F	tRNA-synt_2d	e1vz0F1	A: alpha bundles	X: barrel domains in phase 1 flagellin	H: Class II aaRS and biotin synthetases	T: Class II aaRS and biotin synthetases	F: tRNA-synt_2d	ECOD (develop294)
E	tRNA-synt_2d	e1vz0E1	A: alpha bundles	X: barrel domains in phase 1 flagellin	H: Class II aaRS and biotin synthetases	T: Class II aaRS and biotin synthetases	F: tRNA-synt_2d	ECOD (develop294)
D	Pyrid_oxidase_2	e1vz0D3	A: alpha bundles	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Pyrid_oxidase_2	ECOD (develop294)
D	SRP54	e1vz0D1	A: alpha bundles	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: SRP54	ECOD (develop294)
C	Pyrid_oxidase_2	e1vz0C3	A: alpha bundles	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Pyrid_oxidase_2	ECOD (develop294)
C	SRP54	e1vz0C1	A: alpha bundles	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: SRP54	ECOD (develop294)
B	tRNA-synt_2d	e1vz0B1	A: alpha bundles	X: barrel domains in phase 1 flagellin	H: Class II aaRS and biotin synthetases	T: Class II aaRS and biotin synthetases	F: tRNA-synt_2d	ECOD (develop294)
A	ParBc	e1vz0A1	A: alpha bundles	X: PH domain-like	H: TNF-like	T: TNF-like	F: ParBc	ECOD (develop294)
A	HTH_ParB	e1vz0A2	A: alpha bundles	X: PH domain-like	H: TNF-like	T: TNF-like	F: HTH_ParB	ECOD (develop294)
A	HTH_ParB	e1vz0A3	A: alpha bundles	X: PH domain-like	H: TNF-like	T: TNF-like	F: HTH_ParB	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.90.1530.30	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain		CATH (4.3.0)
H	1.10.10.2830	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
G	3.90.1530.30	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain		CATH (4.3.0)
G	1.10.10.2830	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
F	3.90.1530.30	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain		CATH (4.3.0)
F	1.10.10.2830	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
E	3.90.1530.30	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain		CATH (4.3.0)
E	1.10.10.2830	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
D	3.90.1530.30	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain		CATH (4.3.0)
D	1.10.10.2830	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
C	3.90.1530.30	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain		CATH (4.3.0)
C	1.10.10.2830	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
B	3.90.1530.30	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain		CATH (4.3.0)
B	1.10.10.2830	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
A	3.90.1530.30	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain		CATH (4.3.0)
A	1.10.10.2830	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Chromosome-partitioning protein Spo0J	DNA binding binding nucleic acid binding	developmental process regulation of biological process regulation of developmental process biological regulation positive regulation of biological process positive regulation of developmental process sporulation resulting in formation of a cellular spore anatomical structure morphogenesis regulation of sporulation resulting in formation of a cellular spore anatomical structure formation involved in morphogenesis anatomical structure development positive regulation of sporulation sporulation positive regulation of sporulation resulting in formation of a cellular spore developmental process regulation of biological process regulation of developmental process biological regulation positive regulation of biological process positive regulation of developmental process sporulation resulting in formation of a cellular spore anatomical structure morphogenesis regulation of sporulation resulting in formation of a cellular spore anatomical structure formation involved in morphogenesis anatomical structure development positive regulation of sporulation sporulation positive regulation of sporulation resulting in formation of a cellular spore regulation of sporulation cellular process cell cycle chromosome segregation cell cycle process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR057240	ParB, C-terminal dimerisation domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR041468	ParB/Spo0J, HTH domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036086	ParB/Sulfiredoxin superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050336	Chromosome-partitioning and nucleoid occlusion protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003115	ParB-like, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR004437	ParB/RepB/Spo0J partition protein	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.