1VUB | pdb_00001vub

CCDB, A TOPOISOMERASE POISON FROM E. COLI

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1vubd_	All beta proteins	SH3-like barrel	Cell growth inhibitor/plasmid maintenance toxic component	CcdB	CcdB	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d1vubc_	All beta proteins	SH3-like barrel	Cell growth inhibitor/plasmid maintenance toxic component	CcdB	CcdB	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d1vubb_	All beta proteins	SH3-like barrel	Cell growth inhibitor/plasmid maintenance toxic component	CcdB	CcdB	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d1vuba_	All beta proteins	SH3-like barrel	Cell growth inhibitor/plasmid maintenance toxic component	CcdB	CcdB	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Cell growth inhibitor/plasmid maintenance toxic component	8041673	3000352	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cell growth inhibitor/plasmid maintenance toxic component	8041673	3000352	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cell growth inhibitor/plasmid maintenance toxic component	8041673	3000352	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cell growth inhibitor/plasmid maintenance toxic component	8041673	3000352	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	CcdB	e1vubD1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: CcdB	ECOD (1.6)
C	CcdB	e1vubC1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: CcdB	ECOD (1.6)
B	CcdB	e1vubB1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: CcdB	ECOD (1.6)
A	CcdB	e1vubA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: CcdB	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.30.30.110	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
C	2.30.30.110	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
B	2.30.30.110	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
A	2.30.30.110	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01845	CcdB protein (CcdB)	CcdB protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	CCDB	enzyme regulator activity molecular function inhibitor activity DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity molecular function regulator activity enzyme inhibitor activity DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) regulator activity ATPase inhibitor activity ATPase regulator activity	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process negative regulation of DNA-templated DNA replication DNA-templated DNA replication negative regulation of DNA replication DNA metabolic process DNA replication regulation of DNA-templated DNA replication negative regulation of DNA metabolic process regulation of DNA metabolic process regulation of DNA replication plasmid maintenance	protein-containing complex transcription regulator complex transcription repressor complex toxin-antitoxin complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011067	Plasmid maintenance toxin/Cell growth inhibitor	Homologous Superfamily
A, B, C, D	IPR002712	Toxin CcdB	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.