Annotations: 1VSC

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vsca1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C2 set domains	Vascular cell adhesion molecule-1 (VCAM-1)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1vsca2	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	I set domains	Vascular cell adhesion molecule-1 (VCAM-1)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1vsca3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1vscb1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C2 set domains	Vascular cell adhesion molecule-1 (VCAM-1)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1vscb2	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	I set domains	Vascular cell adhesion molecule-1 (VCAM-1)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1vscb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054753	3000071	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054733	3000071	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054753	3000071	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054733	3000071	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	C2-set	e1vscA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C2-set	ECOD (1.6)
A	I-set_5	e1vscA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set_5	ECOD (1.6)
B	C2-set	e1vscB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C2-set	ECOD (1.6)
B	I-set_5	e1vscB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set_5	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
A, B	VCAM1	2C-LIKE	Homo sapiens (human)	VCAM1*01	C-LIKE-DOMAIN C-LIKE	RPI	2C-LIKE	IMGT (202414-0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05790	Immunoglobulin C2-set domain (C2-set)	Immunoglobulin C2-set domain	-	Domain
A, B	PF07679	Immunoglobulin I-set domain (I-set)	Immunoglobulin I-set domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	VASCULAR CELL ADHESION MOLECULE-1	cell adhesion molecule binding protein binding binding cell adhesion mediator activity oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor primary amine oxidase activity catalytic activity protein-containing complex binding integrin binding signaling receptor binding	leukocyte tethering or rolling leukocyte cell-cell adhesion leukocyte migration cell adhesion cell-cell adhesion immune system process leukocyte adhesion to vascular endothelial cell cellular extravasation cell migration cellular process cell motility cellular response to stimulus regulation of biological process regulation of cellular process leukocyte tethering or rolling leukocyte cell-cell adhesion leukocyte migration cell adhesion cell-cell adhesion immune system process leukocyte adhesion to vascular endothelial cell cellular extravasation cell migration cellular process cell motility cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling calcium-mediated signaling using intracellular calcium source biological regulation intracellular signal transduction cell communication calcium-mediated signaling intracellular signaling cassette signal transduction membrane to membrane docking membrane docking amine metabolic process organonitrogen compound metabolic process organic substance metabolic process nitrogen compound metabolic process metabolic process heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules cell-cell adhesion via plasma-membrane adhesion molecules response to metal ion response to chemical response to zinc ion response to inorganic substance response to ionizing radiation response to radiation response to abiotic stimulus response to extracellular stimulus response to external stimulus cell-cell adhesion in response to extracellular stimulus cellular response to extracellular stimulus cellular response to external stimulus cell chemotaxis chemotaxis cellular response to chemical stimulus taxis locomotion response to decreased oxygen levels response to hypoxia response to stress response to oxygen levels heterotypic cell-cell adhesion multicellular organismal process positive regulation of cell population proliferation regulation of leukocyte activation regulation of cell activation positive regulation of cell activation T cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of immune system process positive regulation of immune system process regulation of leukocyte proliferation cell population proliferation positive regulation of T cell activation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation regulation of cell population proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation positive regulation of multicellular organismal process positive regulation of biological process positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte proliferation leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of mononuclear cell proliferation regulation of multicellular organismal process regulation of cell-cell adhesion positive regulation of cellular process T cell proliferation regulation of lymphocyte proliferation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation regulation of T cell proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus cellular response to vascular endothelial growth factor stimulus response to growth factor cell-matrix adhesion cell-substrate adhesion developmental process cellular developmental process hemopoiesis B cell activation cell development mononuclear cell differentiation lymphocyte differentiation B cell differentiation cell differentiation anatomical structure development leukocyte differentiation chronic inflammatory response defense response inflammatory response heart development animal organ development cardiac neuron differentiation nervous system development cardiocyte differentiation circulatory system development generation of neurons multicellular organism development neurogenesis neuron differentiation autonomic nervous system development system development response to organic substance response to alcohol response to oxygen-containing compound response to ethanol response to cytokine cellular response to tumor necrosis factor cellular response to cytokine stimulus cellular response to organic substance response to tumor necrosis factor response to nutrient levels response to nutrient response to nicotine nerve development innervation cellular response to nitrogen compound response to organonitrogen compound response to nitrogen compound cellular response to amyloid-beta cellular response to oxygen-containing compound cellular response to organonitrogen compound response to amyloid-beta biological process involved in interspecies interaction between organisms response to lipid response to other organism response to lipopolysaccharide response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin	cell periphery protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex cellular anatomical entity alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex cell surface external side of plasma membrane side of membrane apical part of cell intracellular organelle intracellular anatomical structure cell periphery protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex cellular anatomical entity alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex cell surface external side of plasma membrane side of membrane apical part of cell intracellular organelle intracellular anatomical structure podosome cytoskeleton organelle intracellular non-membrane-bounded organelle actin cytoskeleton non-membrane-bounded organelle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle sarcolemma Golgi apparatus cytoplasm intracellular membrane-bounded organelle endomembrane system cell projection actin-based cell projection microvillus plasma membrane bounded cell projection filopodium early endosome endosome intracellular vesicle cytoplasmic vesicle endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, B	IPR013106	Immunoglobulin V-set domain	Domain
A, B	IPR008424	Immunoglobulin C2-set	Domain
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR013151	Immunoglobulin	Domain
A, B	IPR007110	Immunoglobulin-like domain	Domain
A, B	IPR003599	Immunoglobulin subtype	Domain
A, B	IPR003598	Immunoglobulin subtype 2	Domain
A, B	IPR013098	Immunoglobulin I-set	Domain
A, B	IPR047012	Intercellular adhesion molecule/vascular cell adhesion molecule	Family
A, B	IPR003987	Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminal	Domain
A, B	IPR003989	Vascular cell adhesion molecule-1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P19320	ulcerative colitis sickle cell anemia hypertensive disorder atherosclerosis uremia Hypercholesterolemia urticaria cholestasis dermatitis multiple sclerosis cardiovascular disease coronary artery disease Duchenne muscular dystrophy thrombotic disease glioblastoma ulcerative colitis sickle cell anemia hypertensive disorder atherosclerosis uremia Hypercholesterolemia urticaria cholestasis dermatitis multiple sclerosis cardiovascular disease coronary artery disease Duchenne muscular dystrophy thrombotic disease glioblastoma arteriosclerosis disorder intrahepatic cholestasis breast cancer malignant mesothelioma cerebrovascular disorder osteosarcoma chronic obstructive pulmonary disease pancreatic intraductal papillary-mucinous carcinoma cutaneous lupus erythematosus primitive neuroectodermal tumor Sjogren syndrome Emery-Dreifuss muscular dystrophy type 2 diabetes mellitus head and neck cancer arthritic joint disease juvenile dermatomyositis malignant ependymoma medulloblastoma cancer myocardial ischemia ovarian cancer congenital diaphragmatic hernia pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia sarcoidosis subependymal giant cell astrocytoma esophageal adenocarcinoma gastric carcinoma hepatocellular carcinoma inborn carbohydrate metabolic disorder astrocytic tumor kidney disease autoimmune disease malignant glioma myopathy pancreatic ductal adenocarcinoma pituitary cancer diabetes mellitus

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.