Annotations: 1VRB

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1vrbd_	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	Asparaginyl hydroxylase-like	Putative asparaginyl hydroxylase YxbC	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d1vrbc_	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	Asparaginyl hydroxylase-like	Putative asparaginyl hydroxylase YxbC	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d1vrbb_	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	Asparaginyl hydroxylase-like	Putative asparaginyl hydroxylase YxbC	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d1vrba1	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	Asparaginyl hydroxylase-like	Putative asparaginyl hydroxylase YxbC	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Clavaminate synthase-like	8032702	3001848	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Clavaminate synthase-like	8032702	3001848	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Clavaminate synthase-like	8032702	3001848	SCOP2B (2022-06-29)
A	SCOP2 Family	Asparaginyl hydroxylase-like	8020322	4002145	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Clavaminate synthase-like	8032702	3001848	SCOP2 (2022-06-29)

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Copper-bind	e1vrbD1	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.2)
C	Copper-bind	e1vrbC1	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.2)
B	Copper-bind	e1vrbB1	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.2)
A	JmjC_2	e1vrbA1	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: JmjC_2	ECOD (v294.2)

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.120.650	Mainly Beta	Sandwich	Jelly Rolls	Cupin	CATH (4.3.0)
D	6.10.280.40	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
C	2.60.120.650	Mainly Beta	Sandwich	Jelly Rolls	Cupin	CATH (4.3.0)
C	6.10.280.40	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
B	2.60.120.650	Mainly Beta	Sandwich	Jelly Rolls	Cupin	CATH (4.3.0)
B	6.10.280.40	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
A	2.60.120.650	Mainly Beta	Sandwich	Jelly Rolls	Cupin	CATH (4.3.0)
A	6.10.280.40	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF08007	JmjC domain (JmjC_2)	JmjC domain	This entry includes proteins with a JmjC domain that belong to the cupin superfamily, including Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 [1], Ribosomal oxygenase 1/2 [2,3], and 50S ribosomal protein L16 3-hydroxylase fro ...	This entry includes proteins with a JmjC domain that belong to the cupin superfamily, including Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 [1], Ribosomal oxygenase 1/2 [2,3], and 50S ribosomal protein L16 3-hydroxylase from Escherichia coli [4,5]. Proteins are bifunctional, acting as histone lysine demethylases and ribosomal histidine hydroxylases.	Domain

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative asparaginyl hydroxylase	cation binding ion binding binding metal ion binding small molecule binding	-	-

Chains	Accession	Name	Type
A, B, C, D	IPR003347	JmjC domain	Domain
A, B, C, D	IPR039994	Histone lysine demethylase/ribosomal histidine hydroxylase NO66-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

1VRB | pdb_00001vrb