The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth F] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8020248 | 4001513 | SCOP2 (2022-06-29) |
| I [auth F] | SCOP2 Superfamily | L30e-like | 8032628 | 3001739 | SCOP2 (2022-06-29) |
| H [auth E] | SCOP2 Family | Ribosomal protein L6 | 8020243 | 4002033 | SCOP2 (2022-06-29) |
| H [auth E] | SCOP2 Family | Ribosomal protein L6 | 8020245 | 4002033 | SCOP2 (2022-06-29) |
| H [auth E] | SCOP2 Superfamily | Ribosomal protein L6 | 8032623 | 3000724 | SCOP2 (2022-06-29) |
| H [auth E] | SCOP2 Superfamily | Ribosomal protein L6 | 8032625 | 3000724 | SCOP2 (2022-06-29) |
| G [auth D] | SCOP2 Family | Ribosomal protein L5 | 8020240 | 4001498 | SCOP2 (2022-06-29) |
| G [auth D] | SCOP2 Superfamily | RL5-like | 8032620 | 3001709 | SCOP2 (2022-06-29) |
| F [auth C] | SCOP2 Family | Ribosomal protein L4 | 8020239 | 4003628 | SCOP2 (2022-06-29) |
| F [auth C] | SCOP2 Superfamily | Ribosomal protein L4 | 8032619 | 3001146 | SCOP2 (2022-06-29) |
| E [auth B] | SCOP2 Family | Ribosomal protein L3 | 8020235 | 4002103 | SCOP2 (2022-06-29) |
| E [auth B] | SCOP2 Superfamily | Translational proteins | 8032615 | 3000811 | SCOP2 (2022-06-29) |
| D [auth A] | SCOP2 Family | C-terminal domain of ribosomal protein L2 | 8020232 | 4001762 | SCOP2 (2022-06-29) |
| D [auth A] | SCOP2 Family | Cold shock DNA-binding domain-like | 8020233 | 4001909 | SCOP2 (2022-06-29) |
| D [auth A] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8032612 | 3000334 | SCOP2 (2022-06-29) |
| D [auth A] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8032613 | 3000135 | SCOP2 (2022-06-29) |
| FA [auth I] | SCOP2 Family | Ribosomal protein L11, C-terminal domain | 8020251 | 4000731 | SCOP2 (2022-06-29) |
| FA [auth I] | SCOP2 Superfamily | Ribosomal protein L11, C-terminal domain | 8032631 | 3001186 | SCOP2 (2022-06-29) |
| EA [auth 3] | SCOP2 Family | Ribosomal protein L44e | 8020230 | 4003711 | SCOP2 (2022-06-29) |
| EA [auth 3] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8032610 | 3001320 | SCOP2 (2022-06-29) |
| DA [auth 2] | SCOP2B Superfamily | Ribosomal protein L39e | 8034428 | 3001756 | SCOP2B (2022-06-29) |
| CA [auth 1] | SCOP2 Family | Ribosomal protein L37e | 8020229 | 4003706 | SCOP2 (2022-06-29) |
| CA [auth 1] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8032609 | 3001320 | SCOP2 (2022-06-29) |
| BA [auth Z] | SCOP2 Family | Ribosomal protein L37ae | 8020281 | 4003704 | SCOP2 (2022-06-29) |
| BA [auth Z] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8032661 | 3001320 | SCOP2 (2022-06-29) |
| AA [auth Y] | SCOP2 Family | Ribosomal protein L32e | 8020280 | 4003517 | SCOP2 (2022-06-29) |
| AA [auth Y] | SCOP2 Superfamily | Ribosomal protein L32e | 8032660 | 3000982 | SCOP2 (2022-06-29) |
| Z [auth X] | SCOP2 Family | Ribosomal protein L31e | 8020279 | 4001085 | SCOP2 (2022-06-29) |
| Z [auth X] | SCOP2 Superfamily | Ribosomal protein L31e | 8032659 | 3000699 | SCOP2 (2022-06-29) |
| Y [auth W] | SCOP2 Family | Ribosomal protein L30p/L7e | 8020277 | 4001360 | SCOP2 (2022-06-29) |
| Y [auth W] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8032657 | 3001378 | SCOP2 (2022-06-29) |
| X [auth V] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8020273 | 4000600 | SCOP2 (2022-06-29) |
| X [auth V] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8032653 | 3000713 | SCOP2 (2022-06-29) |
| W [auth U] | SCOP2 Family | Ribosomal protein L24e | 8020271 | 4003645 | SCOP2 (2022-06-29) |
| W [auth U] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8032651 | 3000068 | SCOP2 (2022-06-29) |
| V [auth T] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8020268 | 4001752 | SCOP2 (2022-06-29) |
| V [auth T] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8032648 | 3000334 | SCOP2 (2022-06-29) |
| U [auth S] | SCOP2 Family | L23p | 8020266 | 4000943 | SCOP2 (2022-06-29) |
| U [auth S] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8032646 | 3000210 | SCOP2 (2022-06-29) |
| T [auth R] | SCOP2 Family | Ribosomal protein L22 | 8020265 | 4001212 | SCOP2 (2022-06-29) |
| T [auth R] | SCOP2 Superfamily | Ribosomal protein L22 | 8032645 | 3001078 | SCOP2 (2022-06-29) |
| S [auth Q] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8020264 | 4001752 | SCOP2 (2022-06-29) |
| S [auth Q] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8032644 | 3000334 | SCOP2 (2022-06-29) |
| R [auth P] | SCOP2 Family | Ribosomal protein L19 (L19e) | 8020261 | 4001138 | SCOP2 (2022-06-29) |
| R [auth P] | SCOP2 Superfamily | Ribosomal protein L19 (L19e) | 8032641 | 3000890 | SCOP2 (2022-06-29) |
| Q [auth O] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8020260 | 4003555 | SCOP2 (2022-06-29) |
| Q [auth O] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8032640 | 3001045 | SCOP2 (2022-06-29) |
| P [auth N] | SCOP2 Family | Ribosomal protein L5e and archael L18-like | 8020258 | 4006591 | SCOP2 (2022-06-29) |
| P [auth N] | SCOP2 Superfamily | Translational machinery components | 8032638 | 3000571 | SCOP2 (2022-06-29) |
| O [auth M] | SCOP2 Family | L15e | 8020256 | 4000945 | SCOP2 (2022-06-29) |
| O [auth M] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8032636 | 3000210 | SCOP2 (2022-06-29) |
| N [auth L] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8020255 | 4003555 | SCOP2 (2022-06-29) |
| N [auth L] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8032635 | 3001045 | SCOP2 (2022-06-29) |
| M [auth K] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8034442 | 3000433 | SCOP2B (2022-06-29) |
| L [auth J] | SCOP2 Family | Ribosomal protein L13 | 8020252 | 4003623 | SCOP2 (2022-06-29) |
| L [auth J] | SCOP2 Superfamily | Ribosomal protein L13 | 8032632 | 3001134 | SCOP2 (2022-06-29) |
| K [auth H] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8035022 | 3000884 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth F] | e1vqoF1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: tRNA-synt_2 | F: | ECOD (20:10:01) | |
| H [auth E] | e1vqoE1 | A: Ribosomal protein L6 | X: Ribosomal protein L6 | H: Ribosomal protein L6 | T: Ribosomal_L6 | F: | ECOD (20:10:01) | |
| G [auth D] | e1vqoD1 | A: Ribosomal protein L5 | X: Ribosomal protein L5 | H: Ribosomal protein L5 | T: Ribosomal_L5,Ribosomal_L5_C | F: | ECOD (20:10:01) | |
| F [auth C] | e1vqoC1 | A: Ribosomal protein L4 | X: Ribosomal protein L4 | H: Ribosomal protein L4 | T: Ribosomal_L4 | F: | ECOD (20:10:01) | |
| E [auth B] | e1vqoB1 | A: cradle loop barrel | X: RIFT-related | H: Alanine racemase-C | T: Ribosomal_L3 | F: | ECOD (20:10:01) | |
| D [auth A] | e1vqoA1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: Ribosomal_L2 | F: | ECOD (20:10:01) | |
| D [auth A] | e1vqoA2 | A: SH3 | X: SH3 | H: SH3 | T: Ribosomal_L2_C | F: | ECOD (20:10:01) | |
| FA [auth I] | e1vqoI1 | A: HTH | X: HTH | H: Ribosomal protein L11, C-terminal domain | T: Ribosomal_L11 | F: | ECOD (20:10:01) | |
| EA [auth 3] | e1vqo31 | A: Rubredoxin-like | X: Rubredoxin-related | H: Rubredoxin-related | T: Ribosomal_L44 | F: | ECOD (20:10:01) | |
| DA [auth 2] | e1vqo21 | A: Ribosomal protein L39e | X: Ribosomal protein L39e | H: Ribosomal protein L39e | T: Ribosomal_L39 | F: | ECOD (20:10:01) | |
| CA [auth 1] | e1vqo11 | A: Rubredoxin-like | X: Rubredoxin-related | H: Rubredoxin-related | T: Ribosomal_L37e | F: | ECOD (20:10:01) | |
| BA [auth Z] | e1vqoZ1 | A: Rubredoxin-like | X: Rubredoxin-related | H: Rubredoxin-related | T: Ribosomal_L37ae | F: | ECOD (20:10:01) | |
| AA [auth Y] | e1vqoY1 | A: Ribosomal protein L13/L15p/L18e/L32e | X: Ribosomal protein L32e | H: Ribosomal protein L32e | T: Ribosomal_L32e | F: | ECOD (20:10:01) | |
| Z [auth X] | e1vqoX1 | A: Ribosomal protein L31e-like | X: Ribosomal protein L31e/gp120 outer domain | H: Ribosomal protein L31e/gp120 outer domain | T: Ribosomal_L31e | F: | ECOD (20:10:01) | |
| Y [auth W] | e1vqoW1 | A: Ribosomal protein L30p/L7e | X: Ribosomal protein L30p/L7e | H: Ribosomal protein L30p/L7e | T: Ribosomal_L30 | F: | ECOD (20:10:01) | |
| X [auth V] | e1vqoV1 | A: Long alpha-hairpin | X: Ribosomal protein L29 (L29p) | H: Ribosomal protein L29 (L29p) | T: Ribosomal_L29 | F: | ECOD (20:10:01) | |
| W [auth U] | e1vqoU1 | A: Glucocorticoid receptor-like | X: LIM domain-like | H: LIM domain-like | T: Ribosomal_L24e | F: | ECOD (20:10:01) | |
| V [auth T] | e1vqoT1 | A: SH3 | X: SH3 | H: SH3 | T: KOW, Ribosomal_L26 | F: | ECOD (20:10:01) | |
| U [auth S] | e1vqoS1 | A: Alpha-beta plaits | X: Ribosomal proteins S24e, L23 and L15e | H: Ribosomal proteins S24e, L23 and L15e | T: Ribosomal_L23 | F: | ECOD (20:10:01) | |
| T [auth R] | e1vqoR1 | A: Enolase-N/ribosomal protein | X: Ribosomal protein L22 | H: Ribosomal protein L22 | T: Ribosomal_L22 | F: | ECOD (20:10:01) | |
| S [auth Q] | e1vqoQ1 | A: SH3 | X: SH3 | H: SH3 | T: Ribosomal_L21e | F: | ECOD (20:10:01) | |
| R [auth P] | e1vqoP1 | A: Ribosomal protein L19 (L19e) N-terminal domain | X: Ribosomal protein L19 (L19e) N-terminal domain | H: Ribosomal protein L19 (L19e) N-terminal domain | T: Ribosomal_L19e | F: | ECOD (20:10:01) | |
| R [auth P] | e1vqoP2 | A: First alpha-helical domain in heme-dependent catalases | X: First alpha-helical domain in heme-dependent catalases | H: First alpha-helical domain in heme-dependent catalases | T: | F: | ECOD (20:10:01) | |
| Q [auth O] | e1vqoO1 | A: C-terminal subdomain in Lon-related proteases catalytic domains | X: C-terminal subdomain in Lon-related proteases catalytic domains | H: C-terminal subdomain in Lon-related proteases catalytic domains | T: Lon_C | F: | ECOD (20:10:01) | |
| P [auth N] | e1vqoN1 | A: Ribonuclease H-like | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribosomal_L5e | F: | ECOD (20:10:01) | |
| O [auth M] | e1vqoM1 | A: Alpha-beta plaits | X: Ribosomal proteins S24e, L23 and L15e | H: Ribosomal proteins S24e, L23 and L15e | T: Ribosomal_L15e | F: | ECOD (20:10:01) | |
| N [auth L] | e1vqoL1 | A: Ribosomal protein L13/L15p/L18e/L32e | X: Ribosomal proteins L15p and L18e | H: Ribosomal proteins L15p and L18e | T: Ribosomal_L27A | F: | ECOD (20:10:01) | |
| M [auth K] | e1vqoK1 | A: Ribosomal protein L14-like | X: Ribosomal protein L14-related | H: Ribosomal protein L14-related | T: Ribosomal_L14 | F: | ECOD (20:10:01) | |
| L [auth J] | e1vqoJ1 | A: HTH | X: HTH | H: winged helix domain | T: EF-hand_1, EF-hand_7 | F: | ECOD (20:10:01) | |
| K [auth H] | e1vqoH1 | A: alpha/beta-Hammerhead/Barrel-sandwich hybrid | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: Ribosomal protein L10e | T: Ribosomal_L16 | F: | ECOD (20:10:01) | |
| J [auth G] | e1vqoG1 | A: HTH | X: HTH | H: winged helix domain | T: MATH_2 | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth F] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| H [auth E] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| G [auth D] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| G [auth D] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| F [auth C] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| D [auth A] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| FA [auth I] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| EA [auth 3] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| DA [auth 2] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| CA [auth 1] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| BA [auth Z] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| AA [auth Y] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| Y [auth W] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| X [auth V] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| V [auth T] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| V [auth T] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| U [auth S] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| T [auth R] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| R [auth P] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| R [auth P] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| Q [auth O] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| P [auth N] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| O [auth M] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| N [auth L] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| M [auth K] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| L [auth J] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| K [auth H] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |














