1VPV | pdb_00001vpv

Crystal structure of a degv lipid binding protein (tm1468) from thermotoga maritima at 2.45 A resolution

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1vpvb_ Alpha and beta proteins (a/b) DAK1/DegV-like DAK1/DegV-like DegV-like Hypothetical protein TM841 (Thermotoga maritima ) [TaxId: 2336 ], SCOPe (2.08)
Ad1vpva_ Alpha and beta proteins (a/b) DAK1/DegV-like DAK1/DegV-like DegV-like Hypothetical protein TM841 (Thermotoga maritima ) [TaxId: 2336 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyDAK1/DegV-like 8043541 3000337 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDAK1/DegV-like 8043541 3000337 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BTP_methylasee1vpvB1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: TP_methylaseECOD (v294.1)
ATP_methylasee1vpvA1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: TP_methylaseECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.10170 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
B3.30.1180.10 Alpha Beta 2-Layer Sandwich Hypothetical Protein Tm841 Chain: ACATH (4.3.0)
A3.40.50.10170 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
A3.30.1180.10 Alpha Beta 2-Layer Sandwich Hypothetical Protein Tm841 Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02645Uncharacterised protein, DegV family COG1307 (DegV)Uncharacterised protein, DegV family COG1307- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
UPF0230 protein TM1468 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR050270DegV domain-containingFamily
A, B
IPR003797DegVFamily
A, B
IPR043168DegV, C-terminal domainHomologous Superfamily